Gene AFE_1913 details

Gene Information

• Locus tag: AFE_1913
• Symbol: tmk
• ID: 7135729
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1668715
• End bp: 1669359
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643530288
• Product: thymidylate kinase
• Protein accession: YP_002426325
• Protein GI: 218667539
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0125] Thymidylate kinase
• TIGRFAM ID: [TIGR00041] thymidylate kinase

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.325881
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGGCGA CCACACGAAA GAGCGGATTT TTCCTTACCC TGGAGGGTAT TGAGGGTGCG 
GGGAAAAGTT CAGCCCTGCC GGTGCTGGCG GAACTTTGCC ATCAGCAGGG TTATGCCGTT 
GAAGTTACCC GGGAACCGGG CGGAGGGCCA CTTGGGGAGG CGTTGCGCAC CATTTTTCTG 
GACGATAGCC TGCACCTGGA TGCGGATGAG GAACTGCTTC TGCTCTATGC CGGACGCCGG 
AACCACTGGC GGACACGTAT CGCGCCTGCG CTGGCCGCCG GGAAGGTGGT CATCAGTGAC 
CGCTATGAAG ACTCCACTTA CGCTTATCAG AGCGGCGGAA GGGGAGTCCC TCCCGCGCAC 
ATTGCGGCGC TGGCACGCTG GGCGGGAATC ACCCGCCGTC CAGACCTGAC GTTTTGGTTC 
GATATAGCGC CGGAGTTGGG TGCAGCACGT ATCCGCATGC GCCGCCCGGA TCGGCTGGAA 
CAGGAAGACC AGGCCTTTTT CCGCCGCGCT AGGGCGGTCT TTGCGGAGCG TTGCGCGGCC 
GAACCACAAA GAATCTGGCG CGTCGATGCG AGCCTGCCCC TGGCGATGGT GCATGACGCT 
GTGCGGGCAA GGCTCGCCGC CGGCCTGGCA GCCTTTTATT CATGA 

 

Protein sequence

MKATTRKSGF FLTLEGIEGA GKSSALPVLA ELCHQQGYAV EVTREPGGGP LGEALRTIFL 
DDSLHLDADE ELLLLYAGRR NHWRTRIAPA LAAGKVVISD RYEDSTYAYQ SGGRGVPPAH 
IAALARWAGI TRRPDLTFWF DIAPELGAAR IRMRRPDRLE QEDQAFFRRA RAVFAERCAA 
EPQRIWRVDA SLPLAMVHDA VRARLAAGLA AFYS