| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1911 |
|---|
| Symbol | |
|---|
| ID | 7135480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 1666875 |
|---|
| End bp | 1667708 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643530287 |
|---|
| Product | 4-amino-4-deoxychorismate lyase, putative |
|---|
| Protein accession | YP_002426324 |
|---|
| Protein GI | 218667696 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR03461] aminodeoxychorismate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.129492 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGGAG ATCCCCTCGT GGCGGGGGCG TGCGATGCTA CCCTGGACCG TGCGTTACAT
TACGGCGACG GGCTTTTTGA AACCATTGCA GTGATCAGGG GTGTCCCCCT GTTTTGGGAG
GAGCATCTGG CGCGACTCGA GCGTGGCGCG ACCATTCTGA ATATTCCGGC ACCTCATCCG
GAAGTCTGGC GCGAAGATTT ACGGACGGCG CTGGATGCTA TCCCGGCGCA GCCGCGCCTT
CTCCTTAAAC TGACCCTCGG TCGTGGACCA GGGCCGGGGT ACGGCAGCGC CGGCGCGGGC
CCTCCCCGCC GCTATCTGTG GTTGTCCCGG TGGCCGGAGC GAAACCCGCA CTACTGGAAC
CCCGGCATCT CCGCCGCAGC CTGCGAGGTC GCCTTGCTCA CCGGCGCGCC GTATCTCGGC
GTCAAATCTC TCAATCGCCT GAACCAGGTT ATGGCCCGGG ATGCCCTGGC CCCCGAATAT
GCCGAGGGGG TCATGATGGA CCAGTCGGGA CTGTTGCGCG AGGGCATCAT GTCCAATCTG
TTTTGGGTAA TGACTGGTGT TGTCCATACT CCGGAGCTGG AAAACGGCGG CATCGCTGGT
GTTCAGCGGG CCGCCATTCT GGCATGGTTG CAGGCCCATG GCGTGCCGAC CCGCTTGGGC
CACTGGCCAC TGACGGTGCT TCAGGATGCT GACGAAATAT TTTTCAGCAA CAGTCTCATC
GGTGTCTGGC CCGTGCGCTA CTTCATGGGG CGCGAATTAC CCGGGCATGA CGGACCTATA
ACATCCGTCC TCCTCGCATG GACTCGGGAA ATGGGTCTGG GGCCACAACC GTGA
|
|---|
| Protein sequence | MDGDPLVAGA CDATLDRALH YGDGLFETIA VIRGVPLFWE EHLARLERGA TILNIPAPHP
EVWREDLRTA LDAIPAQPRL LLKLTLGRGP GPGYGSAGAG PPRRYLWLSR WPERNPHYWN
PGISAAACEV ALLTGAPYLG VKSLNRLNQV MARDALAPEY AEGVMMDQSG LLREGIMSNL
FWVMTGVVHT PELENGGIAG VQRAAILAWL QAHGVPTRLG HWPLTVLQDA DEIFFSNSLI
GVWPVRYFMG RELPGHDGPI TSVLLAWTRE MGLGPQP
|
|---|
| |