| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1884 |
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| Symbol | hfq |
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| ID | 7135117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1642855 |
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| End bp | 1643121 |
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| Gene Length | 267 bp |
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| Protein Length | 88 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 643530260 |
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| Product | RNA chaperone Hfq |
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| Protein accession | YP_002426298 |
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| Protein GI | 218665494 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCCGGAC AACAAAAAGG ACAGGTCCTT CAGGATCCTT TTCTCAATCT TTTGCGTAAA
GAACATGTTC CTGTCGCCAT CTATCTGGTG AACGGCATCA AGCTGCAAGG TTTCGTGGAG
TCCTTCGACC AGTTTGTCGT GCTACTGCGC AATAACGTCA GTCAGATGAT TTATAAACAC
GCCATTTCCA CGGTGGTTCC TGGTCGCGAT GTGCGTTTGC CCTTGCCGGA AGCTGAAGGT
GAGAGCAGCA CCGAAGAAGA GGCCTGA
|
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| Protein sequence | MAGQQKGQVL QDPFLNLLRK EHVPVAIYLV NGIKLQGFVE SFDQFVVLLR NNVSQMIYKH
AISTVVPGRD VRLPLPEAEG ESSTEEEA
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