| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1880 |
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| Symbol | |
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| ID | 7135288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 1636515 |
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| End bp | 1638062 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643530256 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002426294 |
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| Protein GI | 218667276 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAAAAAC CACTACCAAG ACCCGTCGCT ACGGTACTGG CAACGGCACT TGCGGGAAGT
CTGGCGGCCT GTAGCTTTGA GCCGCCGCTG CGCGTTCCCC AGGCACCGGC CGACAAAACA
CCTTACACGG CGGGCATCAG CCCCAAAGAA ACCGTGGCTC CGGGCGGCCC TTCCGGTCAC
GCCCAGAAGA TCGCGTATGG CAAAGAGCTG CACGAGGAGT GGTGGAAACT CTTTCACTCC
AAGGCGCTCG ACGAATTAAT CGCGACAGGC CTGAAAAACA GCCCGACCAT CGCCCAGGCT
CAGGCCCAGT TGAAACAGGC CGAGGCCACC GCGCGCGCGA ACGCCAGCAT CTTCTATCCA
CAGGTCACCG GCAATCTGCA GGCTAATCGG AGCAAAGCTA GCGCGGCAGC CTTTGGTGGC
AGCAGTGGAT TTCACTATTC CCTGATTACC GGAAGCGTCG GCGTTTCCTA TTACCCGGAC
ATTTTTGGTG TCAACCGTCT GGTCTATCGC AACAGTGAGG CTTTGGTAAA ATATCAGCAG
TGGGAACTGG AAGCGGCACG ATTGACCCTG ACCGGTAACA TCGTCACCAC TGCCGTCAGC
GAGGCGGCGA CAGAGGGGCA AATTCGCGCC ACCCGGGCCA TCGTCGCCCA GGAGCGGCAA
CTTCTGGAAC TCACCGAGAA CCAGTACAAG GCGGGCGCCG TGGACTATCT CAGTGTCGTC
ACCCAGCGCA GCCAACTGGC CAGCGAATTG GCGACGTTGC CCCCGCTGAA GCAGCAACTC
GCCGTCTATC GCCATGAACT GGCCATTCTC GTGGGCGCTT TTCCCGCAGA TGCTAGGCGG
CAGCCCTTTA CCCTGACCGA ATTGCAACTA CCCGAAGAAT TGCCGGTGAG CCTCCCCTCG
CAATTGCTCA AACAGCGTCC GGATATCCGC GCTGCACTTT CGCAAATGAA GGCCGCAAAT
GCGGTCATCG GCGAGGCAAG GGCGCAATTC TACCCTACCG TTCAGCTTAC TGCGGCGTTT
GGCGATACGG CGAGTCATCC CGCGCTGTTT TTCAACCCCG TCAGCAGCAT ATGGAGCCTG
GTAGGTGCCG TGTCCCAGCC GATTTTCGAG GGCGGCAAAC TGGAAGCTCA GAAAGCCGAG
GCCCATGCCG CCTATGATGC GGTTTATGCC GCCTACCGCA GCACGGTGCT GAACGCCTTC
GACCAGGTGG CCAACGCCTT GCGCGCCGTG GAACATGACG CGCAGACCCT TGCTGCGCAA
CGCGCGGCAC TACAGGCCGC AGCGGAAGCA CTGCGGCTGG CGCAGGCGAG TTATCGTGCG
GGTGCATCTG ACTATCTCAC CCTCCTCACT GCAGAAGTGC AGTATGACAA CGCCAAAATT
GCCGAAATAA CCGCTAGGTC GCAGCGCTAT CAGGATACGG CCGCGCTGTT GGTCGCATTG
GGCGGCGGCT GGTGGAACAA AGCCGACAGG AAGTCAACGC CCGTAAATAC ACAGGGCAAG
CCTCATCCCT CTGCTGGCGC GTTGCCGGTA ACACAGGTAA AGCCATGA
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| Protein sequence | MQKPLPRPVA TVLATALAGS LAACSFEPPL RVPQAPADKT PYTAGISPKE TVAPGGPSGH
AQKIAYGKEL HEEWWKLFHS KALDELIATG LKNSPTIAQA QAQLKQAEAT ARANASIFYP
QVTGNLQANR SKASAAAFGG SSGFHYSLIT GSVGVSYYPD IFGVNRLVYR NSEALVKYQQ
WELEAARLTL TGNIVTTAVS EAATEGQIRA TRAIVAQERQ LLELTENQYK AGAVDYLSVV
TQRSQLASEL ATLPPLKQQL AVYRHELAIL VGAFPADARR QPFTLTELQL PEELPVSLPS
QLLKQRPDIR AALSQMKAAN AVIGEARAQF YPTVQLTAAF GDTASHPALF FNPVSSIWSL
VGAVSQPIFE GGKLEAQKAE AHAAYDAVYA AYRSTVLNAF DQVANALRAV EHDAQTLAAQ
RAALQAAAEA LRLAQASYRA GASDYLTLLT AEVQYDNAKI AEITARSQRY QDTAALLVAL
GGGWWNKADR KSTPVNTQGK PHPSAGALPV TQVKP
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