| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1820 |
|---|
| Symbol | dapD |
|---|
| ID | 7136659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1585484 |
|---|
| End bp | 1586308 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643530199 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| Protein accession | YP_002426238 |
|---|
| Protein GI | 218665220 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCAGA ATCTTGCCAC CATGATCGAC GCCGCGTGGG AAAATCGTGC GGAGATCTCC
CCCAAGCAGG CCCCCGCGGA GCTTCGGGAA GCCGTGCATC AGACCATCGA AGGACTGGAC
AAGGGCGTCC TGCGCGTCGC CGAAAAGCGC GATGGCCAAT GGATCACCCA TCAGTGGATC
AAGAAGGCGG TGCTGCTCTC CTTCCGTTTG CAGGATAATG CCCGGATTCC GGGGGGCGAG
ACCAATTTTT ACGACAAGGT GCCGGGCAAG TTCGCCGATT ATAACAGCAA CGATTTCCGC
ACCGGCGGTT TTCGGGTGGT GCCCCCCGCC ACGGCGCGGC GCGGAGCCTT TATCGGTCGC
AACTGCGTGC TGATGCCGTC TTTTGTCAAT ATCGGTGCCT ATGTGGATGA GGGTACCATG
GTGGACACCT GGGCGACGGT CGGCTCCTGC GCCCAGATCG GCAAACATGT GCATCTGTCC
GGCGGTGTCG GCATCGGTGG TGTGCTGGAG CCCTTACAGG CCAACCCCAC CATCATCGAG
GACAACTGTT TCATCGGTGC CCGCTCGGAA GTGGTGGAAG GTGTGATCGT TGAGGAAGGC
TCGGTCATCT CCATGGGCGT CTTTATCGGC TCCAGCACGC GCATTTATGA TCGTGCAACC
GGCGAAATCA CCTACGGACG GGTGCCCGCC GGTTCGGTGG TGGTTTCCGG CAGTCTGCCC
TCCAAGGACG GCAGCTACAG CCTCTACTGC GCGGTCATCG TCAAGCAGGT GGATGCCAAG
ACTCTTGGCA AAGTGGGCAT CAACGCCATT CTCCGCGATA TCTGA
|
|---|
| Protein sequence | MSQNLATMID AAWENRAEIS PKQAPAELRE AVHQTIEGLD KGVLRVAEKR DGQWITHQWI
KKAVLLSFRL QDNARIPGGE TNFYDKVPGK FADYNSNDFR TGGFRVVPPA TARRGAFIGR
NCVLMPSFVN IGAYVDEGTM VDTWATVGSC AQIGKHVHLS GGVGIGGVLE PLQANPTIIE
DNCFIGARSE VVEGVIVEEG SVISMGVFIG SSTRIYDRAT GEITYGRVPA GSVVVSGSLP
SKDGSYSLYC AVIVKQVDAK TLGKVGINAI LRDI
|
|---|
| |