Gene AFE_1794 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_1794 
Symbol 
ID7134638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand+ 
Start bp1559100 
End bp1559771 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content64% 
IMG OID643530173 
Productbase excision repair protein, HhH-GPD family 
Protein accessionYP_002426212 
Protein GI218665212 
COG category[L] Replication, recombination and repair 
COG ID[COG2231] Uncharacterized protein related to Endonuclease III 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGGAAC AAGGGGGCTG GTCAGCCGTA TTCGGAATGC TGGAGGAGGC CTTCGGCCCC 
CAGGACTGGT GGCCCGCGCA GTCCCCCTTT GAGGTCATGG TGGGTGCGAT CCTGACCCAG 
AATACCGCCT GGCGCAATGT CGAAAAGGCG ATTGCCAATC TACGGGCAGT CGACGCGCTG 
AGTGTGCGGG CTCTTCTCGC TCTGCCCGAA GGGGATCTGG CGGAACTGCT CCGGCCATCC 
GGATTTTACC GGATAAAGAC CAGACGCCTG CTGGCCTTGT GCCGGTTCCT GGAGGCCCGG 
GGTGTGGGTG CTGCGCCGGA ACAGCTTGCG CGGCAGGCGA ACATTCCGAC GCTGCGGAAA 
GACTTGCTGG CAGTCCATGG TATCGGCGCG GAGACGGCGG ATTCCATCCT GCTCTATGCC 
CTGGGCCTGC CGGTCATGGT GGTAGACGCC TATACCCGCA GGATCGGCAG TCGCCTGGGT 
CTGCTGGAAG ATGATCTTTC CTACGGCGAA GTGCAGGCCG GGATGGAGGC TGAACTGCAG 
CCCGGCGATG TGCAGACACG CAATGCGCTG CATGCGCTGC TGGTCTCGCT CGGCAAGGAT 
TACTGTCGGC CCCGCCCGCG CTGTGGCCTC TGCCCTCTCC ATGCGTGCTG CGCCTATGCC 
GCAGGAGCAT GA
 
Protein sequence
MREQGGWSAV FGMLEEAFGP QDWWPAQSPF EVMVGAILTQ NTAWRNVEKA IANLRAVDAL 
SVRALLALPE GDLAELLRPS GFYRIKTRRL LALCRFLEAR GVGAAPEQLA RQANIPTLRK 
DLLAVHGIGA ETADSILLYA LGLPVMVVDA YTRRIGSRLG LLEDDLSYGE VQAGMEAELQ 
PGDVQTRNAL HALLVSLGKD YCRPRPRCGL CPLHACCAYA AGA