| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1741 |
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| Symbol | |
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| ID | 7136424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 1506248 |
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| End bp | 1508077 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643530122 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_002426161 |
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| Protein GI | 218665503 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.606989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGCGAT CATGGCGGCG TTGCCTGGAT GCTAGCCTCG CACCGGTTGG CCGATTGCAA
ACGCCACCTC AGCTTAATGC CAGCCAGCTT GCCCACGCAA CGGACCGGCA AGGCGAACTG
GTTGCTCATG CTCGCCCCGT CATGCAATAC CTTTACGCCC AAACCCGTGA TACAGGCAGC
ATGGTCATCC TTGCCGACGA ACGTGGCACG CTGCTTCAGA CGTTAGGCGA TACCGACTTC
CTCGGACGGG CGGAGCGGGT TGCCCTGATG CAAGGAGCCT CGTGGCATGA GTCTCAACAA
GGAACCAACG CCATTGGGAC AGCTATCGCC GAAATTGCTC CGGTCGTGGT GCATGGTCCC
GAACATTTTC TTGAACGCAA CGGATTTCTG ACCTGTGCAG CAGCTCCAGT CATGGCACCA
GATGGCAGGT TGCTGGGTGT ATTAGACATT TCCGGAGACC ACAGGGGTCA TCATCCACAT
ACCATAGGCC TGGTACGTTC AGCGGCGCAG ATGATTGAGA ATCGGCTGTT CGAGACGTGT
CATGGCGATA CAATTCGTGT ACGTTTTCAT CCATTAGCAG AAGGCATCGG AACAGTTGCC
GAAGGAATCA TTGTACTGAA GGAAGATGGC TGGATTACGT GCGCCAATCA TGCTGGGCTT
TCTCTGCTCG GGTTGTGTCC CGCAGATCTC GGTGCAATGC CAGTTACGCG GGTATTTCAG
ATCGGAACCT CCGAACTTGC CAGCTGGGGG CGCAGGCGTC CCGGTGAAAT CATGTCGGTC
ATCCGGAACA ATGGCGAAAG GATTTTTCTG CGTGTCGAAC TAGGCCGTGG TGCAAGACAA
ATCATCGTGC CGTCGCATCC GCAAGAGGAA GCCTGTGCAG ATTCACTTGA GCCATTGAAC
ACAGGTGATG CAGTGATGAA AGCCACTATC GAGAAGGCAC GCCGTGTCGT AGGCAAACCG
ATTGCACTAT TACTTCAAGG GGAGTCTGGT ACTGGAAAGG AAATCTTTGC CAAGGCGTTT
CATGACTCTG GTCCCCGCCG ATCCAAGCCC TTTGTTGCAG TGGATTGCGC AACGCTGCCT
GAGAACCTGA TCGAGGCCGA GTTGTTCGGC TATATGCCTG GTGCGTTCTC TGGTGCGCGA
AAGGAAGGAT ATGCAGGCCG CATCCGTTCG GCCATTGGCG GAACTCTATT TCTGGATGAG
ATTGGCGACA TGCCGATGGC ACAACAGGCC AGATTATTAC GCGTGTTGCA GGAACGTGAG
GTTGTACCAG TCGGTGGCAG CAAGCCGATT CCGGTGGATT TTGTACTGGT CTGCGCTACT
CATCGCAATC TCAAGACGGA AATGGAGGCA GAACGTTTCC GAGCCGACCT ATACTACCGC
ATCAACGGCC TAACCTTGAT GTTGCCTCCA TTACGGGAGA GGAGTGATTT TGCTGCCCTG
ACCTCACGCG TGTTGCGCGA TCTGTCGCCA GAACGTCATC TGTATCTTGG TGATGCAGTA
GCATTGGCAT TCGCCAAGTA TTCTTGGCCG GGTAATCTGC GGCAGTTGGT CAATGCTCTG
CGGACTGCCT GTGCACTTTT AAACGATGAT GAAAGCACGA TACTTTGGGA TCATCTGCCG
GATGATCTAA TCAATGAACT CAGACAAGCT TCTCAAAGCC TGGATATTTC CTCCATGCAT
CTTCCTCAGG AAGAAAATTT GCATGTTTTG TCTTCGGCAG CTATTTCACG GGCAATCGAT
ATCAGCGATG GTAATATGTC TGAAGCTGCC AGACGACTAG GAATCAGTCG TAATACCCTG
TATCGACGGT TGAAAATTAT CAAGTCATGA
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| Protein sequence | MSRSWRRCLD ASLAPVGRLQ TPPQLNASQL AHATDRQGEL VAHARPVMQY LYAQTRDTGS
MVILADERGT LLQTLGDTDF LGRAERVALM QGASWHESQQ GTNAIGTAIA EIAPVVVHGP
EHFLERNGFL TCAAAPVMAP DGRLLGVLDI SGDHRGHHPH TIGLVRSAAQ MIENRLFETC
HGDTIRVRFH PLAEGIGTVA EGIIVLKEDG WITCANHAGL SLLGLCPADL GAMPVTRVFQ
IGTSELASWG RRRPGEIMSV IRNNGERIFL RVELGRGARQ IIVPSHPQEE ACADSLEPLN
TGDAVMKATI EKARRVVGKP IALLLQGESG TGKEIFAKAF HDSGPRRSKP FVAVDCATLP
ENLIEAELFG YMPGAFSGAR KEGYAGRIRS AIGGTLFLDE IGDMPMAQQA RLLRVLQERE
VVPVGGSKPI PVDFVLVCAT HRNLKTEMEA ERFRADLYYR INGLTLMLPP LRERSDFAAL
TSRVLRDLSP ERHLYLGDAV ALAFAKYSWP GNLRQLVNAL RTACALLNDD ESTILWDHLP
DDLINELRQA SQSLDISSMH LPQEENLHVL SSAAISRAID ISDGNMSEAA RRLGISRNTL
YRRLKIIKS
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