| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1738 |
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| Symbol | topB |
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| ID | 7135182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 1501586 |
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| End bp | 1503685 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643530119 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_002426158 |
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| Protein GI | 218667833 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTAT ACATCGCCGA GAAGCCCAGC CTGGGCAAAG GGATCGCCGA GTATTTGCCC
GGATCGAAAA ACAAAGGGAA CGGCTTCATC CAGTGCGGAG TGGATACCGT CGTAACCTGG
TGTTTCGGCC ATATCTTCGA GCAGGAAGAG CCGGACTTCT ATACGCCTGA TGATGTTCCC
ACCACGCCAA AGGGCAAGAA GAAATGGCGA TTTGAGGAAC TGCCCATATT TCCTGAGCAA
TGGAAGAAGC GGGCGAAGGA TGACGCCAAG GCCCAGATCA AGGTGATCCG GGCCTTGCTC
AAGAAAGCCT CGTCTGTCGT CAATGCAGGC GACCCGGACC GAGAGGGCCA GCTGCTGGTG
GATGAGGTCC TGGAGGAACT CCGCTGGAAA GGACCAACCC TGAGGATCTG GCTGGCCGCC
CTCGATGAGC AGTCCGTGCG TAAGGCGCTG GCATCGCTCA AGGATAACCA CGACTACCAG
AATCTCCGAA ACTCAGCCGA AGCCCGTGCC CGCGCGGACT GGCTCATGGG CATGAATCTC
ACCCGTGCTT TCACCCTGCG CAACAGCGGC GCCGGAGTCG TCTCCGTGGG TCGGGTGCAG
ACGCCGACCT TGGCTCTGGT CGTGGCCCGT GATGAGAAGA TCGAGCACTT CAAGCCGAAG
GACTACTACG TTCCGCGCAT CAACGCGGGC TTCTGGGCCA CCTGGGAGTT GCGGGAGGAT
TTCGAGGGGG TCGATGCCGA AGGGTATCTC ACCGACCGGA AAGCCGCTGA CCGGCTGGCA
TCCCGGGCCA AGGCGGAAGG CAAGGCCACG GTGAAGGACT TCACCAGCGC GGAAAAGCAG
CAGCAGGCAC CATTAGGCTT CTCCCTTGCA GAGTTACAAA AGGTCTGCTC CGCCAAGCTC
GGCATGTCGG CACAAAGTGT CCTTGATGCG GCCCAGGCGC TGTACGAGGA GCACAAGGCG
GCGACCTATC CCCGGACCGA TTGCCGCTAT CTTCCGGAAG AACAGCATGG GGATGCCGGA
CAGATACTGT CCGGCCTGGC AAAAGCTGGA TTTGCGGATC TGGTGAAAGC CGCCGATTCT
AACCGGAAGT CGGCCATCTG GAATACGGGC AAAGTGACGG CGCACCACGC CATCATTCCG
ACCGGCTCCA TGCAGGGCTC TATGAGCCCC GCAGTGGCCA AAGTCTACGA TATCATCGTC
CGCTCCTATC TCGCGCAGTT CTATCCGCCC TATGTGTACC GGGCGATCAA GGCTCTACTG
ACTTGCACCA GCGAGGACTG GAAGGCGACT GCCAACATCC CGGTATCCGC AGGCTGGAAA
GCCGTGTATG GGATGACCGA TGACGATAAT GATGACACCC CCGCCCAGCC GATCCCGGCG
CTCAAAAAAG GCCAGGTCCT GACCGTCCAG GATGCAGATG TCCAGGCAAA ACAGACCAAG
CCGCCGGCCC GATTTACGGA TGGGTCGCTC ATTGAGGCCA TGAGCAACAT CCATAAGGTG
GTGGAGGATG AAGCCGCCAA GGCCAAACTC AAGGAAACCT CTGGCCTGGG AACCGAGGCC
ACTCGGGCCA GCATCATTGA AACGCTGCTG ACCCGGGGAT TCCTGGAGCG CAAAGGCAAG
CAGATCCTCT CCACCCAGGC AGGGCGGGCG CTGGTTCACG CGCTGCCCAA AGACCTGACC
GATCCCGTCC TGACGGCACG CTGGGAAGAT GCCCTGTCAT CCGTGTCTGA GGGCCGCGTG
ACGCTACAGC AGTTCGAGGA AGCCCAGCGC AAATTCGTGG TGCGTATGAT CGAGGCGGCC
AAGGCGACGA CCGTAGCTGT CGGCCAGGCA CGGCCAACTT CCGGCGCTGG GCGTGGCAAG
TCGTCTACCG GAAAAACGCG GGGCGTCGGA CAAAAGACTG GCCCCGCCTG CCCGGACTGC
AAGAAGCTGA CCATCACCCT GAAGACGAAG AAGGGCGATG CCTTTTTCAA GTGCGAGGGC
TGCCAGTCTT GCTGGTGGCC GGACAAGCAG GATGCCAAGA AGCTCGGAAC GAAGTGGGGG
CTAGAAAAGA ATGAGTACGT TAGAAGAGAA GACTGGATTT CTCACACACA GCAGGATTGA
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| Protein sequence | MKLYIAEKPS LGKGIAEYLP GSKNKGNGFI QCGVDTVVTW CFGHIFEQEE PDFYTPDDVP
TTPKGKKKWR FEELPIFPEQ WKKRAKDDAK AQIKVIRALL KKASSVVNAG DPDREGQLLV
DEVLEELRWK GPTLRIWLAA LDEQSVRKAL ASLKDNHDYQ NLRNSAEARA RADWLMGMNL
TRAFTLRNSG AGVVSVGRVQ TPTLALVVAR DEKIEHFKPK DYYVPRINAG FWATWELRED
FEGVDAEGYL TDRKAADRLA SRAKAEGKAT VKDFTSAEKQ QQAPLGFSLA ELQKVCSAKL
GMSAQSVLDA AQALYEEHKA ATYPRTDCRY LPEEQHGDAG QILSGLAKAG FADLVKAADS
NRKSAIWNTG KVTAHHAIIP TGSMQGSMSP AVAKVYDIIV RSYLAQFYPP YVYRAIKALL
TCTSEDWKAT ANIPVSAGWK AVYGMTDDDN DDTPAQPIPA LKKGQVLTVQ DADVQAKQTK
PPARFTDGSL IEAMSNIHKV VEDEAAKAKL KETSGLGTEA TRASIIETLL TRGFLERKGK
QILSTQAGRA LVHALPKDLT DPVLTARWED ALSSVSEGRV TLQQFEEAQR KFVVRMIEAA
KATTVAVGQA RPTSGAGRGK SSTGKTRGVG QKTGPACPDC KKLTITLKTK KGDAFFKCEG
CQSCWWPDKQ DAKKLGTKWG LEKNEYVRRE DWISHTQQD
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