| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1731 |
|---|
| Symbol | |
|---|
| ID | 7136885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1498010 |
|---|
| End bp | 1499350 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643530112 |
|---|
| Product | conjugal transfer protein TraB |
|---|
| Protein accession | YP_002426151 |
|---|
| Protein GI | 218667893 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.518188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGCA AATACGTACC CGTTTCCGTC TACCCGGTAG ACGATTCGCG GAGGAAGTCC
GCTCCCGTCT CCGGATTCGC CATTCCGGCA CTCCAGGGTG CCATGGTTGG CACCCTGGCC
TGGCCTCATG CCATCTGGCT TGCCCCACTG GCGTTGCTAC TTCTGCCCAT CGTGAACAAG
CGGCACTGGT TGCACCCGTT TCTGCTGATG CTGGGTTACC ACCTGGCGAC GACCTACGGC
CTCATCAAAG GCACGTCGGT TTTCTTCCTA CACGCCGGGC TGTTTCTCGG TATTGGGTTC
TGGTCGCTGT CATCTCTGGC CTTTGCCCTG CCCTATCTGG CGTACCCGTA CATTACTCTG
TATTTCCGTG GCGGCGGCCT TGCTGGCGGC GGCCTTGCTG GCGGCAGCCC TGCAGGCGGC
AGCCCTGCTG GCGGCGGTTT TGGCGCGGTC ATGGCCACCG TCATTACATC CGCCATATCC
ACGATCTTCC CACCTTTGGG GGTCATCGGC TGGACTTCCC CCTGGCTCGG CGCCGTCGCC
GCAGGCCCGA GCGGCATCCT GCTGACCATT CTCGGGATCT TCGCTCTGGG GCGCTTGACG
CAGAAGAATC AAGAGATCTT GGCCCGTCTG CTGGTGGTTG GATTTGTTGT CGTCGCTCTT
TGGCTTTTGC CTTTTGCTTT CCCTGCCCTG GATGCCATGA TGGGGCACCC GCTGCCCACA
GCGCCCACTG GCTGGGTGGG CATCAACACT GATCTGGGCC GTCTGCGTTC CAATCTTTCC
TATGTCGATG CATCCATGGA ACTGGCTCCG AAGGTCCTGG CGGATCTGCG CTCTGGCGAC
AAGGTGGTGT TTCTCCCGGA AACCGTGGCA GGGCCATGGC TGCCGGGCAC CCGGGCCATT
TGGCGCCCGG TCATCCGCTG GACGGCGCGA CATCCAGAAC CAATCGTGTT GCTCGGGGCC
GATGTGCCCC TTGCCAACGG TTACCTGGAC GCTCTGGTGA AGATTCAGGA TGGCCATCAG
ACGGTACTGC CGGATCACAT CCCTGTACCT TTCTCTATGT GGCACCCGTG GCGCCCCCAG
GGCAGTTTCC GGATGACCCC GTTTTCCCGA AAACCGGAAA CCACGGAGAT GGACGGCAAA
AAGGTCGGCT ATCTCATCTG CTATGAGCAA CTGCTGATGT GGCCGGCCCT CGTTCTATAC
CCGCATGGGA TACAAATCCT GTTGGCACCG GCCAATGACT GGTGGGCGCG GGGGACAGAT
ATCCCGGCCA TCCAGAGAGT GTCGGCAAAG GCCTGGGCTG CGTTCTTCAG CGTGCCGGTA
TTGTTCGCGG TGAATCAATG A
|
|---|
| Protein sequence | MQSKYVPVSV YPVDDSRRKS APVSGFAIPA LQGAMVGTLA WPHAIWLAPL ALLLLPIVNK
RHWLHPFLLM LGYHLATTYG LIKGTSVFFL HAGLFLGIGF WSLSSLAFAL PYLAYPYITL
YFRGGGLAGG GLAGGSPAGG SPAGGGFGAV MATVITSAIS TIFPPLGVIG WTSPWLGAVA
AGPSGILLTI LGIFALGRLT QKNQEILARL LVVGFVVVAL WLLPFAFPAL DAMMGHPLPT
APTGWVGINT DLGRLRSNLS YVDASMELAP KVLADLRSGD KVVFLPETVA GPWLPGTRAI
WRPVIRWTAR HPEPIVLLGA DVPLANGYLD ALVKIQDGHQ TVLPDHIPVP FSMWHPWRPQ
GSFRMTPFSR KPETTEMDGK KVGYLICYEQ LLMWPALVLY PHGIQILLAP ANDWWARGTD
IPAIQRVSAK AWAAFFSVPV LFAVNQ
|
|---|
| |