| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1725 |
|---|
| Symbol | |
|---|
| ID | 7137181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 1493950 |
|---|
| End bp | 1496079 |
|---|
| Gene Length | 2130 bp |
|---|
| Protein Length | 709 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643530106 |
|---|
| Product | sensory box-containing diguanylate cyclase, putative |
|---|
| Protein accession | YP_002426145 |
|---|
| Protein GI | 218666510 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.671328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCCATCT TCGGCTACGG CTACCTGCGG AGGGTCGGCC GAGAGCGGGA GGGGGAACGG
CAAAGCGCGG AGCAGACCCT GTGGGAGGAG AAGGAGCGGG CGGAAGTCAC CCTGCATTCC
ATCGGGGATG CGGTGATCAC CACCGATACC GAAGGCCGGG TGATGGACAT GAACGTCGTC
GCCGAAGCGT TGATGGGCTA TGCCCGGACG GAAGCCGTGG GCAGGCCCCT GGAAGACGTC
TTCCGCATTG TCCAGGAAGG CAGCCATGCT CATTTGGACA ATCCCGTCCG GCGAGTTCTG
GAAGAGGGCC AGGTGGTGAG GCTGGCCAAC CACACCATGC TCCTCACCAA GGACGGCCAG
GAACGCGCCA TCGAGGACAG CGCGGCGCCC ATCCGAGACC GGCAGGGCGT ACTGTTGGGC
GTGGTCCTGG TCTTCCACGA CGTCACCGAG AAGCGCCGGC TGATCGCCGA ACTGGCCCAT
CAGGCCACCC ACGACGCCCT CACGGGCCTC CCCAACCGGG TGCTCTTCAT GGACCGGCTG
GGCCATGATC GAGCCCAGAC CCTGCGCCAT GAGCACCTGC TGGCGGTGGG TATCCTGGAC
CTGGACGGCT TCAAGCAGGT CAATGACCAC TTCGGACATG CCTCCGGCGA CGCGCTGCTG
CAGGAAATGG CACAAAGGTT GCATAGGGAA ATGCGTTCCG GGGACACCTT GGCACGCATG
GGCGGCGACG AGTTTGGGCT GCTCCTCCCG GATGTCGGGA ACCTGGAACA GGTGGAAGAC
GCCTGCACGC GCCTGCTGGA AGTGCTCCGC GCTCCCTTCT ATCTAGGAGA CGAAGAGATC
CCGCTGTCCT CCAGCATCGG CCTGACCAGC TATCCGCTGG ATGACAGCCT GCCAGAGGAC
CTCCTGCGCC ATGCGGATCT GGCCCTCTAT GCGGCCAAGG CCGCCGGGCG GGATCGCTAT
CATTGGTTCG ACTGGCCGAT GGATAAGCTG CAGCAAGAGG CCATGGAGGT GCGGAAGATG
ACGGAAAATG CGCTCGATCG GGGCCGCCTG CTGCTCCACT ATCAGCCCGT GGTGGAGATC
GGCAATGGTC CCGTGGGCGT GGAGGCCCTG ATCCGCCTCG ACCACCCCGA GCGCGGCCTG
CTGCCTCCCG CCGCCTTCGC CGCCGCCCTC GACGCACCGC GCCTGACCCG GCGCATCGGC
TGCTTCGTGC TTGCCACGGC TCTGACCCAG ACCCAGACTT GGCATCGGCA GGGCATGCCC
TTGCGCATCT CGGTGAATAT CAGCGCCCAC CATCTCCTGG ACCAGCGCTT TCTGTCCGAC
CTGCGGGCCG CCCTCGACGC CCATCCGGAT CTGCCCCCAT CCGCCGTCGA GATCGAGATC
ACCGAAACGG CCCCGCTGCT GGATTTCGCC GGGGCGCGGG AAACCCTGCT GGCCTGCAAC
CGCCTGGGAG TGCGCATCGC CCTCGACGAC TTCGGCACCG GCAACGCCTC GCTGACCTAT
CTGCAGAAGC TGCCCGCGCA GACCATCAAG ATCGATCAGA GCTTCGTGCG CGACATCATC
AACGATCCCA AGGATTACGC CATCGTCTCC GGCGTGGTCA CCAGCGCCCG ACTCCTGGGC
CTGGAAGTGA TTGCCGAAGG GGTGGAAACG GCCGAACACG CCGCCATGCT TGGCCACTTG
CAGTGCCACT GCCTGCAAGG CTATGCCATC GCCCGGCCCA TGGCACCGGA AGCGATCCCG
GGTTGGATCA GACAGTATAA GCCTTTGCTT TATCATGGCT TTTCTGCAAC TCCTACCCCA
ACTGGCATGA TTTCAATTCA TAATCAACGT GTTAAAAGAT TTATTGAGGC GCTGCGCCAC
CAGACTCCCT TTCCCTCCTT GGTCATCGAA CCCGAGGCGG AGCAGCAATG CCATCTGGGA
CTATGGTTGC AAGGGGAAGG GAGGCTCCAA TATGGGGACG ACGCGGCCTT CTACCAGCAA
TTGCTGGCAC GGCATGCCCA TCTGCACGCC CTGGCCCGGG AAGCCAAGGC CCTGTACGAC
GCGGGGGACG GGGAAGGGGC GGAGCAGAAA GGGGCGGAGT TGGAACGGGA AAACCAAGCG
CTGAACTCGC TCATCATCAC AACTCATTGA
|
|---|
| Protein sequence | MSIFGYGYLR RVGREREGER QSAEQTLWEE KERAEVTLHS IGDAVITTDT EGRVMDMNVV
AEALMGYART EAVGRPLEDV FRIVQEGSHA HLDNPVRRVL EEGQVVRLAN HTMLLTKDGQ
ERAIEDSAAP IRDRQGVLLG VVLVFHDVTE KRRLIAELAH QATHDALTGL PNRVLFMDRL
GHDRAQTLRH EHLLAVGILD LDGFKQVNDH FGHASGDALL QEMAQRLHRE MRSGDTLARM
GGDEFGLLLP DVGNLEQVED ACTRLLEVLR APFYLGDEEI PLSSSIGLTS YPLDDSLPED
LLRHADLALY AAKAAGRDRY HWFDWPMDKL QQEAMEVRKM TENALDRGRL LLHYQPVVEI
GNGPVGVEAL IRLDHPERGL LPPAAFAAAL DAPRLTRRIG CFVLATALTQ TQTWHRQGMP
LRISVNISAH HLLDQRFLSD LRAALDAHPD LPPSAVEIEI TETAPLLDFA GARETLLACN
RLGVRIALDD FGTGNASLTY LQKLPAQTIK IDQSFVRDII NDPKDYAIVS GVVTSARLLG
LEVIAEGVET AEHAAMLGHL QCHCLQGYAI ARPMAPEAIP GWIRQYKPLL YHGFSATPTP
TGMISIHNQR VKRFIEALRH QTPFPSLVIE PEAEQQCHLG LWLQGEGRLQ YGDDAAFYQQ
LLARHAHLHA LAREAKALYD AGDGEGAEQK GAELERENQA LNSLIITTH
|
|---|
| |