| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1707 |
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| Symbol | |
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| ID | 7135293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1476740 |
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| End bp | 1479913 |
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| Gene Length | 3174 bp |
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| Protein Length | 1057 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643530087 |
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| Product | sensory box-containing diguanylate cyclase, putative |
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| Protein accession | YP_002426126 |
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| Protein GI | 218665621 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAC CAGATACCGC TAATTTTCTC ACCCTGGACG CCCTGCTAAC CAAGATTAAT
CAGATGATTT CTGGCGCTGA AGATGAGTCA GTACTTCTGC AACACATATG CGAAATCGCT
GTGCAGCAAA GCGGTCTGAA GCTGGCCTTT GTTTCCCGAC CAGATACACA AGGGCGATTT
CAGTTTCTTG CCGCTGCCGG ACAAGTGGGC TACCTCAAAG ATCTGTTCAT CTCCAGTGAT
GCGCAGATTC CGGAAGGGCA AGGTCCCGCA GCTCGCGCTT GGCGCGAGGC GCGCGTTTAT
TTTGGCACTA ATTTTACGAA GGAGCCGTTC CTGGCCCCCT GGAAAAAGCG TGCGCAGGCC
TATGGCCTGG CCGACAGCGC AACACTGCCC ATCTTCCGCG ACGGAAAGGT CTGGGCAATT
TTATCGGTAT ATCGCGGCGA CGAAGCCCAA TTCGACGACG CCCTGCAGAC CATACTGCAA
CAATTGTCCC TCCAGATCAG TCAGGGCCTG GAGCGACTGC AGGATGTGCA GAGGTTGCGA
TTTTTGCGCG CATCGGTGGA GGCGCTGGAA GACGGCGTCA CCATTGCTGA CCCGCAAAGA
CACCTTATCT ATGTCAACCA GGCTTTCCTG AAGCTCACCG GCTACGCCAT GAAAGAAGTG
CTTGGCCGCG ACTGCAAGTT CCTGCAAGCC CCGCAGACCG ATGCGCAGAC AGTCCGGCAG
ATTGCTATTG CTTTGGCGCA GGAACAGTCC TACACCGGAG ACATTCTCAA CCAGCGCAAC
GACGGCACCC TGTTCTGGAA TCGGTTGCAC ATTGACCCGG TTCTCAATGA CCAGGGCGCA
TTGACCGGAT TCATCGGCCT GCAACGGGAC ATCACACAAG AGCGCGAAAA CAGGAACCTC
ATCCAGACAC TGCTGGACAA CGCGGCGGTG GGGATCACGG TAGTACGCCA ACGCCAAATC
GTGCAGTGCA ACCAGCATCT AGCAGGCATG ATAGGTCTGT CGCCAGAGCG CGTGATCGGG
CAAAGCAGTC GGTTGTTTTA CCCCGACGAG GCAACCTGGG AACGGATCGG ACAGGCCTAT
GCCGAACTCC TCCAAACGGG ATCGACCATT ATCCGCCATG TAATGCTTGC GCACTACCAC
AATCAAAACC CACCAGTCGT CGACGCTTTT GTTAAATTGC TGGACGATCA GGAGACCTCC
ATCTGGACCG TGGTGGATGT GACGGAGTCG GTACAGCAGG CACAACAGCT AAAGAAACTG
CAAAATATCT ATCAGGCGTT GACGGTAGAA GCGGATATTC TTCTGCAGGG GCGTAATGTG
CAGGACATGC TGGAAACCAC CTGCACCCGG CTCGGGGAAA TGGGGATCTT TCACACGGTC
GGCGTTGTGC GTCCCGATGC GCAGGGAAGG GTGCGGGTGT TAGCTGGAGC GGGTCCCGGG
ATCGAGATGA TGCAACCGTT TCAAATCCAC GTGGACGATC CCTCTAGCAT GTCTGCGCGC
GCATGGCGCG AGCAGAGAAC CATCGTACAT TCCGATTTCT CCTCCTCACA GGCAGATCGT
CCGTGGGGGC AGGTACTCGC TACATCCGGA TGGGTTTCGG CATTGGCGAC TCCCGTATGG
CGAGATGGGA CGCCCTTTGC CGTTATAAAA TTTATTTCCA CGGAGCAGGT GTTTGATGCC
GATACCACCA CCGCCTGTGA GCGCTTGGCC TCCTTGCTCG GCCATAGTCT CGACGAGCAT
GACCTCAAGG AGCACTTGCG TTTACTGCAG GAACAGGAGG CGAAGATCGC CAGGACCGAC
CTGCTCACGG GATTGCCCAA CCGGCGCTTC CTGGAAATCC AGATGGAACA GGCCATAGCT
CGTGCCGAAC GCCACAACCA GCTCCTGGCG GTCTGCATGC TGGATCTGGA CGGCTTCAAG
CCTGTCAACG ATACCTATGG CCATGGGGCC GGAGATGAAG TGCTGGTGGC CTTGGGAAAA
CGCCTGTCCG AAGCCTTGCG CAAATCGGAC TTCGTCGCCC GCCTGGGAGG GGATGAATTC
GTCCTGCTGG TGGAAGATCT CGAGGATCTG GACGATCTTG CCAACATCAT GAAAAAGATC
GAGGACACCA TCACCGCCCC CATTCCGCTG AGCAATGGCA AAAGCGTTCA GATCGGGGCG
AGCATGGGGG TCGCCCTTTA CCCCTTTGGG GATACAGACA CGGGGGACAA ACTCCTGCGC
CTGGCGGATC AGGCCATGTA CGAGAGCAAG GCAAATAAGG CGGCCCGGGA GCGCTTCTGG
GTGCTTTTTG GCGAGGAAGT ACAAAAAGAA AAATGCACCC CCGGGCAACA GCTTTTGGAT
GCTGGGGCTC TGGAGGTCTG GTATCAACCT GTCCTGGATA GCCGGACACG CAGGGTGGTC
GGTGTCGAGG CCTTGGCACG TCTACGGGAT ACGGATGGTA CCCTCTGGAC GCCGGCGGAG
TTCCTGCCGC AATTGCAGAT TGGAAATCTT TCTGATCTGA CCGGGAAAGT CTTGGCGCAG
TCCTTGGCCG ATCTGTCTCT TCTGGATGCA CATGGATGGT CCCTATGGGT CTCTGTCAAT
CTGGATCCAC GCTCCGTCTC GGAAGGCTGC ATCACCTGCC TACAGGAAAT GATCGCCCAA
AGCACAGTGG ATCCCTCCCG CATCACTCTG GAGATTCTGG AGGGAGATGA TTTCCTGGAA
CAGCAGAAGG CGTTGGATCA TCTCCTGGAA ATAAAAGCAT TAGGTGTCCG GCTGGCCCTG
GACGATGTGG GCAGCGCCTA TAGTTCCCTG CTGCGGATAA AGGATCTTCC TATTGATGAG
ATCAAACTGG ACCAGAGCTT TATCCGCTCC TTGGAGCAGC GACCTCAGGA TCTGCATTTT
GTAGGTACCA TTCAGGATCT CGCTGCTGGC ATGGGCGTGG ATCTGGTGGT GGAGGGGGTG
GAAACGGAGG ATATTCTGGA TGCGATCATC GTCACGGGTG CGCAGTTCCG TAAACGTTCA
GCCAACCCAC CCTTGCGGGT TGGCGCCAAT CAGGCTAATG CAGATTTTTT CCAGTTCCAC
GGCAAGAGTT CGTGGAGTTT TTTGTTGGGC CAGGTCGGGA GCTTTTCGAG CACGTCACAG
AGGTACGCGA AGGGCTCGAT GCCGTTGAGT TTGCACGTTT CGATGATGCT GTAG
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| Protein sequence | MTAPDTANFL TLDALLTKIN QMISGAEDES VLLQHICEIA VQQSGLKLAF VSRPDTQGRF
QFLAAAGQVG YLKDLFISSD AQIPEGQGPA ARAWREARVY FGTNFTKEPF LAPWKKRAQA
YGLADSATLP IFRDGKVWAI LSVYRGDEAQ FDDALQTILQ QLSLQISQGL ERLQDVQRLR
FLRASVEALE DGVTIADPQR HLIYVNQAFL KLTGYAMKEV LGRDCKFLQA PQTDAQTVRQ
IAIALAQEQS YTGDILNQRN DGTLFWNRLH IDPVLNDQGA LTGFIGLQRD ITQERENRNL
IQTLLDNAAV GITVVRQRQI VQCNQHLAGM IGLSPERVIG QSSRLFYPDE ATWERIGQAY
AELLQTGSTI IRHVMLAHYH NQNPPVVDAF VKLLDDQETS IWTVVDVTES VQQAQQLKKL
QNIYQALTVE ADILLQGRNV QDMLETTCTR LGEMGIFHTV GVVRPDAQGR VRVLAGAGPG
IEMMQPFQIH VDDPSSMSAR AWREQRTIVH SDFSSSQADR PWGQVLATSG WVSALATPVW
RDGTPFAVIK FISTEQVFDA DTTTACERLA SLLGHSLDEH DLKEHLRLLQ EQEAKIARTD
LLTGLPNRRF LEIQMEQAIA RAERHNQLLA VCMLDLDGFK PVNDTYGHGA GDEVLVALGK
RLSEALRKSD FVARLGGDEF VLLVEDLEDL DDLANIMKKI EDTITAPIPL SNGKSVQIGA
SMGVALYPFG DTDTGDKLLR LADQAMYESK ANKAARERFW VLFGEEVQKE KCTPGQQLLD
AGALEVWYQP VLDSRTRRVV GVEALARLRD TDGTLWTPAE FLPQLQIGNL SDLTGKVLAQ
SLADLSLLDA HGWSLWVSVN LDPRSVSEGC ITCLQEMIAQ STVDPSRITL EILEGDDFLE
QQKALDHLLE IKALGVRLAL DDVGSAYSSL LRIKDLPIDE IKLDQSFIRS LEQRPQDLHF
VGTIQDLAAG MGVDLVVEGV ETEDILDAII VTGAQFRKRS ANPPLRVGAN QANADFFQFH
GKSSWSFLLG QVGSFSSTSQ RYAKGSMPLS LHVSMML
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