| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1706 |
|---|
| Symbol | |
|---|
| ID | 7135564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 1479769 |
|---|
| End bp | 1481406 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643530088 |
|---|
| Product | ISAfe4, transposase orf3 |
|---|
| Protein accession | YP_002426127 |
|---|
| Protein GI | 218667507 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3436] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.249951 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCAA CCTCACACAC ACTGCTTCCC ACCAGCCCGG ACGCCCTGCG CGATCTGGTG
CTGAGCCTGC TGCAACAGCA GGAGGAACAG GAAGCGGAAC GCACCCGGAT CATCGCCCAA
CAGCAAGCGG CCATTGCCCT GCGCGATGAA ACCATCGCCC GCCTGGAAAG CACCATCGCC
AAACTGCAGC GCTGGCGATT CGGACGCCGT TCGGAAAAGC TCTCTCCCGA CCAGATCAGT
CTTTGGGAAG AAGCGCTGGA TACCGAAATC GCGGCGATGG AAAGCCTCCT CGAAACCGTT
CTGGAAGACA GTGCGGCCGT GACCGCTGGC CGTGCAGAGG GAGCAGCCGC CGACGCGCAG
ACCGTAACGG TCCCCGCCCG TCCCGTACGC CGGCACCCCG GCCGCATGGC GATCCCCGCC
CATCTGCCCC GGGTAGAAGT ACGTCACGAT CCCAAGACTT GCACTTGCGC GCAATGTGGG
GGTCCACTTG AAACGGTCGG GGAAGAGATC AGCGAAAAAC TGGATTATAT CCCCGGACGC
TTCCAGGTGA TTCGCCATAT CCGCCCCAAA CTGGCCTGCC GCCCCTGCGG TACCCTCGAA
AGTCCGGCAT TACCGGCACA GGTGATTGAC AAGGGCTTGC CCACGGCGCG CCTAGTGGCC
CATGTGATGA CGGCGAAACA CGTGGATCAC CTGCCTTTGT ACCGGCAGGG AACCCAGTAC
CAGCGAGCGG GCGTACCGAT CTCTCGCGCC ACTCTCTGCA GCTGGCTGGG TCAGGGCGAA
TACTGGATCA GCATTCTCGC CGAAGCCTGC AAAATGGCCT TGCTGGAAGG AAAGATTCTG
CACGCCGACG AGACGCCCTT GCCCGTCCTC AACCCCGGCA GCGGCAAGAC GGATAAAGCC
TATCTCTGGG TGTATCGCAG CCAGGCGGAT GCCCCGCATC CCATCGTGGT CTTTGATTAT
GCCCCGGACC GTAAGGGGAT CCACGCGCAG CACTTTCTGG GTGACTGGCA AGGCATCCTC
CAGACCGATG ACTATGGGGG GTATGATGCC CTCTACCGCA AGGAACAGAT CATCGAAGCG
GGATGCTGGG CGCATGTCCG CCGCCACTTC TATGACGTGG AACAGCGGGG TCCCAGTCCG
GTAGCCCAGA AGGCCCTGGC CTGGATCGTC AAACTCTACG CCATCGAAGC GGAGATCAAG
GAATCTCTAC CAGATCAGAA AGTCGCCGCC CGGCAGCAGC GTGCCGGTCC CCTGCTGGAA
GCCTTCCATG CCTGGCTCAC GGAAACCCAG ATGCAGGTGG CGCCGCAAAG TGGCATCGCT
AAAGCCATCG GCTATGCCCT CAACCGTTGG AAAGCACTGA CGCTCTACCT CGAAGAAGGA
CAACTCAGCA TCGATAATAA TCCGGTGGAG CGAGCGCTGC GGGGCGTGGC CATTGGTCGC
AAGAATTTTT TATTTGTTGG AAATGATGCC GGTGGCGAGC GTGCCGCGTC CTTCTACAGC
ATCATCGAAA CGTGCAAACT CAACGGCATC GAGCCCTTCG CGTACCTCTG TGACGTGCTC
GAAAAGCTCC CGACCTGGCC CAACAAAAAA CTCCACGAAC TCTTGCCGTG GAACTGGAAA
AAATCTGCAT TAGCCTGA
|
|---|
| Protein sequence | MVSTSHTLLP TSPDALRDLV LSLLQQQEEQ EAERTRIIAQ QQAAIALRDE TIARLESTIA
KLQRWRFGRR SEKLSPDQIS LWEEALDTEI AAMESLLETV LEDSAAVTAG RAEGAAADAQ
TVTVPARPVR RHPGRMAIPA HLPRVEVRHD PKTCTCAQCG GPLETVGEEI SEKLDYIPGR
FQVIRHIRPK LACRPCGTLE SPALPAQVID KGLPTARLVA HVMTAKHVDH LPLYRQGTQY
QRAGVPISRA TLCSWLGQGE YWISILAEAC KMALLEGKIL HADETPLPVL NPGSGKTDKA
YLWVYRSQAD APHPIVVFDY APDRKGIHAQ HFLGDWQGIL QTDDYGGYDA LYRKEQIIEA
GCWAHVRRHF YDVEQRGPSP VAQKALAWIV KLYAIEAEIK ESLPDQKVAA RQQRAGPLLE
AFHAWLTETQ MQVAPQSGIA KAIGYALNRW KALTLYLEEG QLSIDNNPVE RALRGVAIGR
KNFLFVGNDA GGERAASFYS IIETCKLNGI EPFAYLCDVL EKLPTWPNKK LHELLPWNWK
KSALA
|
|---|
| |