| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1695 |
|---|
| Symbol | |
|---|
| ID | 7135004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 1467443 |
|---|
| End bp | 1468588 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643530078 |
|---|
| Product | conjugal transfer protein |
|---|
| Protein accession | YP_002426117 |
|---|
| Protein GI | 218666648 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA AGACATGGCT TTCTTTGGGG CTCGCCGTCC TTCCTGGATT GGCGTTGGCT
GGCGTAGATA CTGGACTCCC CGCGGTGAAG CCGATCGGTT CGCTGCAGGG AAAACCGCCA
ATACAGCCTG CAGGGACGAA AACCGGTTCC GCCCATCCGT CCACGACACC ATCCGCATCT
GGCGGCACCA CATCTGCGCG CCAGAAGGTC CCGGCCATCT CCCCGGAGGC TGCCGAGCGG
ATAGCGGCGG TGCAGGTGTG GCAACAGTCC ATCGCCACCC CGCCCGAGGG CCCAGAAAGT
GCTGCAACCA GAGCGTTGGC ACGTCAGTCG CTGACGGCGT CCCAGGCAAT GGATAACACT
CTTCCCGTGG TCGGCGGCGC GAACGGAACC GTCGACAGCC TGGCCGGTCG GCCCGTGCTG
GTTTGCTCGC CGCTGCACAC CTGCATCATC GAGCTGCCCG ACGGTGTCAG GCCCGTGACG
ACCGTCGGCG TCAGCAAGTC GGAATGGAAT GTGCAGCAGG CGCTGGTTGG GAAACAGCCG
GAAATCTTCC TGAGCCCGAA ATTCAAGGGT CTCCACCAAA ACATCGTGGT AGCCGCAACC
GACCAGAGCA GGCCCATCAA CTATGAAATC CGTCTGGTCA GTGACGCAGT GCGCTACATT
CCCGCCCTGA AGATCGAGGA TAGCGGGGGC GAGGTCCGTT CCTGGAAAAC AGACTTGCAG
TCAGCAGACT CGCAGGCAGC AGACTCGCAG GCGGCGGCCT TGCTGACGGC AGACAACGCA
CCAACGGATC AGTCGGCTGC TGACCATAAA GGCAATGTAC TGCCTCTGCC CAATATCCGT
CTCAACCACG TCAATCTTCG CTGGTCCATT CATTGCGGTG GCGGCGGATG GTTCCGTTCC
AGCGACTGCA AACCAATCCG TCCATTGCGC GTGTATGACG ATGGGACCCA TACCTTCATC
GACATGCCTC AGGGGCTGGC GAGCCACGGA GGCTTTCCCA TCCTGCAAGC CCGCAATGCC
AGCGGACACC TGATCGGAGT CGATACCCAG ATCCGGGGCA ACACCTATGT CGTCGATTCA
GTTCCTGCCG AGATCCTGTT ACGGCTGGGT TCTGAGGTGG TCACCATCCA GCAGGAGGGG
AGGTAA
|
|---|
| Protein sequence | MKTKTWLSLG LAVLPGLALA GVDTGLPAVK PIGSLQGKPP IQPAGTKTGS AHPSTTPSAS
GGTTSARQKV PAISPEAAER IAAVQVWQQS IATPPEGPES AATRALARQS LTASQAMDNT
LPVVGGANGT VDSLAGRPVL VCSPLHTCII ELPDGVRPVT TVGVSKSEWN VQQALVGKQP
EIFLSPKFKG LHQNIVVAAT DQSRPINYEI RLVSDAVRYI PALKIEDSGG EVRSWKTDLQ
SADSQAADSQ AAALLTADNA PTDQSAADHK GNVLPLPNIR LNHVNLRWSI HCGGGGWFRS
SDCKPIRPLR VYDDGTHTFI DMPQGLASHG GFPILQARNA SGHLIGVDTQ IRGNTYVVDS
VPAEILLRLG SEVVTIQQEG R
|
|---|
| |