| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1492 |
|---|
| Symbol | |
|---|
| ID | 7134068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 1291388 |
|---|
| End bp | 1293523 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643529880 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002425920 |
|---|
| Protein GI | 218665196 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCATT TCAAACAACC CCTCATATCC TGCCACCCAC TCAAGGTTGC AATAGGCTTG
GCACTCACAA CGGTCGCCGC GCAACAAGTG GCTATTGCCG ATACGCCTGT ACTCCCCATG
GTACAAAGCA CAGCCTCCCA TATGGGGAGC ACATCAGGAA ACTCTGCGAC TGCACCTTAT
TCATCTCCGT TGGATTCGAC GCAAACAGAA GAAACGATTA CTGGCCAAGC CATCTCTGCC
ATGAATCCCA CCGGAGATTT CGCCCAGAGT CTGGCAAACC TTCCGAACAT GAATATCGTT
CCCACGGGCA ATAACGGTAT CGACGGATCC AACATTTACA TGCGGGGTAT GGATCAATCC
CTGATCAACT TCACCATGGA TGGGATCCCG ATTAACTCGC CCATCGGCTA CGGCTTTTAT
TCTAATGAGA ACCTGTCACC CCAATATATT TCCGCCATTA ATGTCAAACC AGGCCCAGGT
TCCGCTGCCA CTGTTGGTAA CGCCAATTTC GCAGGCACGG TCGCCATACA TTCGGTGACT
CCATCCAGCC ATTTCTCGGC AACGCCGTTT TATGGGTACG GATCATTTGG CACGCAGTCT
TACGGTGGCG TCATCAATAG CGGAGAAATA TTAGGTGGCA TCATTCCCAC CAAGATTCTT
TTGGGTGCCA CCAACACCCG AAGCAACGGC TATTTTTACA ATACACAAAG CCACAAATAT
ACATTTATAT TCAAATCAAT CAGTCAGATC GGTCCGGGGC GACTTACCTT ATTTTTCTTC
CAGAATAACC AGACATGGAA TTTTTATAAT GGTGCCACCA AACAGGAAAC TGCAGAATAT
GGACGTCGCT ACAGCGGTAA TTCAGCCGAT CCTGGTTCGC CTGATTATTA TGGAGACAAT
TTCAAAACAT TCCTGAACTG GCAATCCTAT GTGAAGTATG CATTTCACAT AGGGAGACTG
GAACTATCTG ATCAGTATTA TTATTTCTCC GGCAAGGGTG GTGGCACGTT CACGCAAAAC
AATCGCGCGG CTCCCGGCGG ATTCTATCTG GCCACCAAAC TATTTCCGGT GCATGAATTC
GGAAACATCT TCAAGGCACG CTACCCTCTT GGTTCCGGCA GCCTGGAAGC AGGGGTCTGG
GCAGACTCCG ATAACGAAAC CGCATTTCAG TATCAGTCGA ACCTATATAA CCGATTTACC
GGTGCCTTGG TGTCGGCGCC CGTCAGTCAG CCCGTCGTGA CGGAAAGCGT TCAGCCCTAT
GTGCAGGGGG AATGGTCACC GATTACCACC TTACGACTGA CCACGGGAGT GAAATTGTTG
AATTTACACC GGACCTGGCG CGATTATGTC AGCAAAATGG AACGGGCGGC AAACTTCAAC
CAATGGCTAC CATCCTTTGG TGTGAATTAC GCGCTCCAAC CCAATTGGCA TCTCTATTTC
AATTACACCC GCTCCGCCGA AGCACCAAGT TCCAGCCAGC TTACCGCCAG TTATTTCAAC
AGCGGCCTCC AACCGGAAAT TGCAAACAGC TATGAGGCGG GGACTTACTG GCATCAAGGA
GCATGGGGCG GGCGTTTCAC GGCATTTCGC ACCAATTTTG AGAATTACAT CCTGTCAACC
CCTGTAGTTA TCGGGAATCA GGTGTTCAGT ACCCAAAGCA ATGCGGGTGC TGCTATCTAT
CAGGGGCTGG AATTCAGCAA CACATACCAG ATCACTCCCT GGCTTTCTGC ATTTGCCAAT
TTTGGCATTC TGGATGCGCG TATGACTTCT AAAAATCAGC CTGCCTTGCA AGCCCCTCAC
CATACCGAGG CTGTTGGGCT AAACGTAAAA ACAGCCCATT GGCAGGGCAT GCTGGCGGTA
CAGCAAATCG GCTCTCGATA TTACGCCACG GGCGCAACCG GTAATTCAAA ACTGGATGGT
TATGTCGCCG GCAGCCTCAG CGTCGCTTAC GATACGGGCG AACTTTCCTT ATGGAAAGGC
TACATCCTGC CGAATTTGCA GATCTCAGCG CATGTCAACA ACCTATTCAA TAATGATTAC
GCACTAAGCG CTTCACCCAG TACCAGTTCG GCAGGGGCAG CCTATCAGTT GGCGCAACCC
ATCAATGCAT TCGCTGAAAT AAGTACAACA TTCTGA
|
|---|
| Protein sequence | MLHFKQPLIS CHPLKVAIGL ALTTVAAQQV AIADTPVLPM VQSTASHMGS TSGNSATAPY
SSPLDSTQTE ETITGQAISA MNPTGDFAQS LANLPNMNIV PTGNNGIDGS NIYMRGMDQS
LINFTMDGIP INSPIGYGFY SNENLSPQYI SAINVKPGPG SAATVGNANF AGTVAIHSVT
PSSHFSATPF YGYGSFGTQS YGGVINSGEI LGGIIPTKIL LGATNTRSNG YFYNTQSHKY
TFIFKSISQI GPGRLTLFFF QNNQTWNFYN GATKQETAEY GRRYSGNSAD PGSPDYYGDN
FKTFLNWQSY VKYAFHIGRL ELSDQYYYFS GKGGGTFTQN NRAAPGGFYL ATKLFPVHEF
GNIFKARYPL GSGSLEAGVW ADSDNETAFQ YQSNLYNRFT GALVSAPVSQ PVVTESVQPY
VQGEWSPITT LRLTTGVKLL NLHRTWRDYV SKMERAANFN QWLPSFGVNY ALQPNWHLYF
NYTRSAEAPS SSQLTASYFN SGLQPEIANS YEAGTYWHQG AWGGRFTAFR TNFENYILST
PVVIGNQVFS TQSNAGAAIY QGLEFSNTYQ ITPWLSAFAN FGILDARMTS KNQPALQAPH
HTEAVGLNVK TAHWQGMLAV QQIGSRYYAT GATGNSKLDG YVAGSLSVAY DTGELSLWKG
YILPNLQISA HVNNLFNNDY ALSASPSTSS AGAAYQLAQP INAFAEISTT F
|
|---|
| |