Gene AFE_1471 details

Gene Information

• Locus tag: AFE_1471
• Symbol: speA
• ID: 7136167
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1273533
• End bp: 1275446
• Gene Length: 1914 bp
• Protein Length: 637 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643529858
• Product: arginine decarboxylase
• Protein accession: YP_002425898
• Protein GI: 218667242
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1166] Arginine decarboxylase (spermidine biosynthesis)
• TIGRFAM ID: [TIGR01273] arginine decarboxylase, biosynthetic

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATGGT CGGTCGCGGA TAGTCGCCAT CTGTATAACC TGCCGCATTG GGGTGAGGGG 
TACTTCGATG TGGGGGCGGA CGGGCAGATC ATCGTCCGTC CCGATGCCAA TCCTCAGGGT 
GCCGCCGTTG GGCTGGCCGA TGTCGCGGCA GTATTGGGTG AACATTCCCT CGGTTTGCCC 
TGCCTCCTGC GTTTCCCGCA GATCCTCGGG GATCGTGTGG CGCGCCTGCA CGGCGCCTTT 
GGTGATGCCA TCCGCGCCCT CGATTACAAG GGCAGCTTCA CTCCCGTTTA TCCGATCAAG 
GTCAATCAGC AGCGGCGCGT CGTGGAGGAG ATTTTGCGGG CCGGTGCGGG AAGTGTCGGC 
CTGGAGGCGG GTAGCAAACC GGAGCTGCTC GCGGTCATCG GACTGATGCC GGTGGGTGGA 
ACCATTATCT GCAATGGATA CAAGGATAAG GAGTATATTC GCCTGGCCCT GACGGGTGAG 
AAACTGGGCA TGCAGGTCTA CCTAGTGGTG GAAAAGCCAT CGGAGCTGCC CCTGATCCTG 
AATGAGGCCA GCAGGCTCGG CGTCAAACCC CGGATTGGAG TGCGCGCGCG CTTGGCATCC 
GCCGGTTCCG GCAAGTGGCA GAATACCGGT GGCGAAAAGT CCAAATTCGG CCTGTCTACG 
GCGGACATCC TGGAACTCGT CCACCGCCTG CGCGCAGAAA ACGCGCTGGA TAGCCTGCAA 
TTACTGCACT TCCATCTCGG CTCCCAGATT CCCAACATTC AGTTCATCAG GGGCGGCATG 
CGTGAATGTG CCCGCCTCTA TGCCGAACTG CGGCGCCTGG GCGCGGCCCT GGAGGTGGTG 
GATGTGGGCG GTGGGCTCGG CGTGGACTAC GAAGGCACAC ATTCCCGCGC GTATTGCTCC 
ACGAACTATC ATGTCTCGGA CTATGCCCAT GCCATCGTCG CCACACTGGC TGATGTATCA 
CGCCAGGAGG GCCTGCCGGA GCCGCGTATC ATCTCTGAAT CGGGGCGGGC GCTAACGGCT 
CATCACGCCA TCTTGGTGGC TAATGTCAGC GATGTGGAGA TGGCGGCCGG AGAACATCCG 
CCGTCAACAC CTTCCGCCGA CCTGATGGAT GGTGAATGGG GCCGTCTGCT CACTCGCCTG 
GATCAGGGTA ACGCCGCTGC CGCGCTGGAA GTCTACCAGG AGGCACTCTA TCTGCTGGCA 
GAGGTTCACC AGCAATTCAA CCTCGGTATC ATTCACATCG AGGGGCGGGC CGAGGCCGAA 
GGCATTTATG CCCAACTACT CTGGCGGGTG CGCGGCTTCC TTGACCCGCA TAATCGCGCG 
CACCGTGACA TCCTCGACGA ACTCGACGAA AAGCTGGTAG ACAAATATTT CGTTAACTTT 
TCCCTGTTTC AGTCGCTGCC CGATGTCTGG GCCATTGATC AGATTTTTCC GATAGTGCCC 
ATACAGCGGC TGAATGAAGA GCCGACCCGG CGGGCTCGCC TCGAAGACAT CACTTGCGAT 
TCCGACGGCA GAATCGACGC GTACGTCACG GCGGAAGGCT TGACGCCGGC GCTGCCGGTA 
CATGCGCTAC AGGAGGGAAG GCCTTATCTC CTCGGTATTT TTCTGGTGGG TGCTTATCAG 
GAAATTCTCG GGGATATGCA TAATCTGTTC GGCGATACGG ACTCCGTGAA TGTGTTCTGT 
GATGCCTCTG GCGTCATGCG TCTGGAGCAG CCGCTGGAGG GCGATACGGT GGAATCCGTC 
CTGCAATACG TACAATTTTC CGCTACCGAC CTGCTGGCCC GTTATCAGAA GAAAGTGGAA 
GCCTGCAGCC ATCTCGACGA TGCGGAGCGT CACGAGTTCC TACGGCAGTT TGCGGATGGG 
CTGCATGGTT ATACGTATTT AACCGCCCAT CACCAGATCG AAGACCTGCC GTAG 

 

Protein sequence

MTWSVADSRH LYNLPHWGEG YFDVGADGQI IVRPDANPQG AAVGLADVAA VLGEHSLGLP 
CLLRFPQILG DRVARLHGAF GDAIRALDYK GSFTPVYPIK VNQQRRVVEE ILRAGAGSVG 
LEAGSKPELL AVIGLMPVGG TIICNGYKDK EYIRLALTGE KLGMQVYLVV EKPSELPLIL 
NEASRLGVKP RIGVRARLAS AGSGKWQNTG GEKSKFGLST ADILELVHRL RAENALDSLQ 
LLHFHLGSQI PNIQFIRGGM RECARLYAEL RRLGAALEVV DVGGGLGVDY EGTHSRAYCS 
TNYHVSDYAH AIVATLADVS RQEGLPEPRI ISESGRALTA HHAILVANVS DVEMAAGEHP 
PSTPSADLMD GEWGRLLTRL DQGNAAAALE VYQEALYLLA EVHQQFNLGI IHIEGRAEAE 
GIYAQLLWRV RGFLDPHNRA HRDILDELDE KLVDKYFVNF SLFQSLPDVW AIDQIFPIVP 
IQRLNEEPTR RARLEDITCD SDGRIDAYVT AEGLTPALPV HALQEGRPYL LGIFLVGAYQ 
EILGDMHNLF GDTDSVNVFC DASGVMRLEQ PLEGDTVESV LQYVQFSATD LLARYQKKVE 
ACSHLDDAER HEFLRQFADG LHGYTYLTAH HQIEDLP