Gene AFE_1450 details

Gene Information

• Locus tag: AFE_1450
• Symbol: dxr
• ID: 7135018
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1250740
• End bp: 1251921
• Gene Length: 1182 bp
• Protein Length: 393 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643529838
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: YP_002425878
• Protein GI: 218665633
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.377566
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAAATGA CACGAGGCAT CTGCATACTC GGGGCTACGG GCTCCATCGG CAAGAGCACC 
CTGGATGTGG TGTCGCGCCA CCCCGACCAA TTCCGGATCG TCGCGCTTAC CGGCAATCAC 
CGTGTGGCAG AGATGCAGTT GCTGTGTCAG CAACATCATC CCGAGTTGGT GGTTATGGCT 
GCCCCGGAAG CGGCGCAGCA GTTGCGGGTG GGGCTAGGCG ATGCCGGCCT CAAGAAGATC 
CAGGTAGAGA GTGGCCCGGA GGCGCTTGCC GAAGCGGCAC GTATGTCCGG CGTCGATGAG 
GTGATGGCAG CCATTGTGGG CGCCGCCGGC CTGTTACCGA CCCTGGCCGC CGTAGAAGCC 
GGGAAAAAGG TCTATTTGGC CAACAAGGAA TGTCTGGTGA TGGCGGGCAA CCTCTTCATG 
GAGCGTGTGC GACAGCATCA GGTGACGCTG CTTCCCATCG ATAGCGAGCA CAATGCTGTA 
TTCCAGTGCT TTGCAGATGG CAAAGGCGTG CGCCGTATTC TGCTGACGGC TTCCGGAGGA 
CCGTTCCGGA CCTGGCCGGC GGAGCATCTG GCGGTGGTAA CGCCGGACCA GGCCTGTGCC 
CATCCCAACT GGGTCATGGG CCGAAAAATC TCCGTAGACT CTGCAACCAT GATGAATAAG 
GGGCTGGAGG TCATCGAGGC GCATTGGCTC TTTGACCTCC CCGCCTCCCG GATCGACGTG 
ATGATTCATC CCCAGAGCAT CATCCATTCC ATGGTGGAAT ATGTGGATGG CTCCGTGCTG 
GCGCAACTGG GCAACCCCGA TATGCGCACC CCCATTGCCC ATGCTCTGGC TTTTCCAGAG 
CGCATGGAAA GCGGGGTTTC GTCTCTGGAT CTGGCGCATG GGCCGGACCT TCAGTTCGAG 
GCACCAGACT TACAGCGGTT TCCTTGCCTG GCCCTCGCTT TTGATGCCCT GCAGGCAGGG 
GGAGCAGCAG CGACGGTGCT GAACGCGGCG AATGAGATTG CCGTACAGGC CTTCCTGGAA 
GGGCACCTGC CATTTCTACG AATTGCGGCC GTCGTCGAAG ATACCCTTGG TGAATTACAG 
CCCGCCGCCC CAGACCATCT GGACGATGTG CTGGCTATCG ACCAACTGGC ACGGGAAGTG 
GCTCTCCGCC ACCTGGCCCG GCATGGATCG GGTATGCAGT GA 

 

Protein sequence

MEMTRGICIL GATGSIGKST LDVVSRHPDQ FRIVALTGNH RVAEMQLLCQ QHHPELVVMA 
APEAAQQLRV GLGDAGLKKI QVESGPEALA EAARMSGVDE VMAAIVGAAG LLPTLAAVEA 
GKKVYLANKE CLVMAGNLFM ERVRQHQVTL LPIDSEHNAV FQCFADGKGV RRILLTASGG 
PFRTWPAEHL AVVTPDQACA HPNWVMGRKI SVDSATMMNK GLEVIEAHWL FDLPASRIDV 
MIHPQSIIHS MVEYVDGSVL AQLGNPDMRT PIAHALAFPE RMESGVSSLD LAHGPDLQFE 
APDLQRFPCL ALAFDALQAG GAAATVLNAA NEIAVQAFLE GHLPFLRIAA VVEDTLGELQ 
PAAPDHLDDV LAIDQLAREV ALRHLARHGS GMQ