Gene AFE_1400 details

Gene Information

• Locus tag: AFE_1400
• Symbol: rnc
• ID: 7134433
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 1215071
• End bp: 1215751
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643529792
• Product: ribonuclease III
• Protein accession: YP_002425832
• Protein GI: 218665431
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATGTTT TAGAATCTCT GCAACAGTCG GTCGGCTATC AATTCCGTGA GCAGTCCCTG 
CTGTTGCAGG CGCTGACCCA TCGAAGTGCG GGCGCCCGGC ACAATGAACG GCTGGAGTTT 
CTGGGGGACG CGGCACTGAA TTTTGTAGTA GCGGCAAAAC TCTTCGCCCG CTTTCCCAAG 
GTGAGCGAGG GGGATCTGTC GCGGATGCGG GCACGGCTGG TTCGGGAGGA AACCCTGGCG 
GAGATCGCCG GAAAAATCGC TTTGGCCGAT TCCCTGATCC TGGGCCCCGG AGAAATACGC 
AGCGGTGGCG CCCGGCGAGA CTCCATCCGC GCCGATGCCT TGGAGGCGGT GATTGGTGCG 
GCTTTCCTGG ATGGCGGCTT TGGTGCGGCG GAGCGTATCG TTGCACAACT GGTCGAGCCC 
TTGATGACTG ATGACCTGGG TGGCGAAGAG TTGCGCGATC CCAAAACGCG CCTGCAGGAA 
TTCCTGCAGG GACAGGGACG TCCTGTACCC GTCTATACGA CGGTGGCGGA AAAAGGACAG 
GCCCATGAGC GGCGTTTCGT GGCGCGTTGC AGTGTGCCTG GCGCCGAAGC TACCGAAGCG 
GAGGATGGCA GCCGGCGGAA AGCCGAACAG CAGGCGGCGG CGCTGATGCT GGCACAACTG 
CAGGTTGCCG TGCATGGATG A 

 

Protein sequence

MDVLESLQQS VGYQFREQSL LLQALTHRSA GARHNERLEF LGDAALNFVV AAKLFARFPK 
VSEGDLSRMR ARLVREETLA EIAGKIALAD SLILGPGEIR SGGARRDSIR ADALEAVIGA 
AFLDGGFGAA ERIVAQLVEP LMTDDLGGEE LRDPKTRLQE FLQGQGRPVP VYTTVAEKGQ 
AHERRFVARC SVPGAEATEA EDGSRRKAEQ QAAALMLAQL QVAVHG