| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1394 |
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| Symbol | rpoE |
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| ID | 7134932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1208831 |
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| End bp | 1209457 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643529786 |
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| Product | RNA polymerase sigma-E factor |
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| Protein accession | YP_002425826 |
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| Protein GI | 218665263 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0732931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGTAAAA TCATGGGACG CAGCACGGCG GGTGGTCAGG AACATGGCGC CCCCAGTGAC
CTGCTCCTCG TCCAGCGCGT ACAAAAGGGA GAAAAGGGGG CATTTGATCT CCTGGTACGC
AAATACCAGC ACAAGGTGAT TTCCCTGGTC GGGCGTTTTG TGCGCACTCC GGAGGAGGCC
GAAGATGTGG CCCAGGAAGC CTTTGTCAAA GCCTACCGCG CGCTTGCCAA TTTTCGCGGC
GATAGCGCGT TTTACACCTG GTTGTATCGT ATCGCCGTCA ATACGGCAAA GAATCACCTC
GTAGCCCAGG GCCGGCAGGT TTCCATTGTG GATGTGGAAA CGGAAGATGC GGAACAATTT
GCCAGTGCCG ATGGACTAAG AGAATACGAT ACTCCGGAAG GGTTATTACT CAGTAGGGAG
TTGGCGGAAT ATATCAACAA GGCATTGACT GCGTTGCCGG AGGATTTGCG CATGGCGGTC
ACCTTGCGGG AGTTTGAAGG CTTGAGTTAC GATGAAATTG CCCAGGTCAT GGAGTGCCCG
GTGGGGACGG TGAGGTCCCG GATTTTTCGG GCGCGTGAAG CAATTGCCAG GGTTCTGGCC
CCTTTGTTGG AGCGGGAAAA GTCATGA
|
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| Protein sequence | MGKIMGRSTA GGQEHGAPSD LLLVQRVQKG EKGAFDLLVR KYQHKVISLV GRFVRTPEEA
EDVAQEAFVK AYRALANFRG DSAFYTWLYR IAVNTAKNHL VAQGRQVSIV DVETEDAEQF
ASADGLREYD TPEGLLLSRE LAEYINKALT ALPEDLRMAV TLREFEGLSY DEIAQVMECP
VGTVRSRIFR AREAIARVLA PLLEREKS
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