Gene AFE_1371 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_1371 
Symbol 
ID7135823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp1185141 
End bp1189286 
Gene Length4146 bp 
Protein Length1381 aa 
Translation table11 
GC content61% 
IMG OID643529766 
Producthelicase, SNF2/RAD54 family 
Protein accessionYP_002425806 
Protein GI218666513 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGATAA CGCTCTCTCA GGATGCACAA AAGGTGATGC AGGCGTCGGC CCTCATCTGG 
ACCTGGCATC CCGCCAATCT GACACTCGAC GCGCTGGGTG CGCTGATTAT GAAGCAAGCC
CATGGCAAGG CGTTCACCCA TGCGGCGGTC GTTGATGCGC GAGCGGAACT CTTTGCTGCC
GGTCTGCTGG TGGATCAGGT GGTTCGCCCG GCTTACGCCC GGTTGGCAGA CTCCGTCCGG
CTGAAACAAT ACCGCGAACT GCTGAATCGG TTTACCCCCG AAGTTTTGCG TCAGGCCCTG
ATCCGGGTGG TGGAACTGGA CACCAAAAGA TCCCATGGCT GGCCCCGCCT GGCGCGGGAA
ACCGGCATTG CCCTGTTGCG CCTGGGCGTA TATACAGGCA GCACCCCGCA AGAGATGGAA
ACGCTGTGGC GGCAACTGCG GGTCATTTAC GCATGGAAGG AACTGATTGC CCCGGCCTGC
GTTGATGGTT TTGATCCGGA CCGGATGTCC GGGGTGGATG CACGGTTTCG CGAAATCATC
CTGCACCAGG CGTTCAATGC GTTTTCCCAC CAATGGGACG CCAGTGCGCT GCCCGCGTTT
CAATGGCTGA TGACGCAACC CAGGGAATCC CAAATGTCCC CGGCGTTGCG CTATCCACTG
GCGGAAGCCC TGCTGCATCG TGGGGAACTG GGGCACTTGC GGGACGTGCT CAGAGACGAT
GAAAATCCTG AGGCCGAAGC CTTGCGTGCT TGTGCACTGG TCCAGGAAGG CCAGTGGGCG
GCGGCGCAGA AGATGTTTGA ACCCGCGCTG AAAGCCTTGC GGCAGGAAAC GGGGGCGAGA
AAGCAGCTGC TGCCAGAAAC CATCCTCTGG ATGTATCCGT TGTGCCTGCT GGCCCAGCAA
ACCCCAAATC ATCTGCTATT GGCCCGAAAA TTTTGCATTA CGGAATCCGG CTCGCGCAAT
CCCAGCACAT TGGATCCCTG GGGTGCGTGG GTGCATGGCA TCGATGTGCG CCTTGGGGAC
GCGGCGCTGA ACAGCCATGC CCTATTTCAC ACCGGGTATT CGCCACTGGC TTTGTTATGG
TTCGCCCTGT TGCGCGCCTG GTTGGGCCCT AAAGTCGTGC CCGCCGTAAC GGACAAGCGA
CAAAAGGACC TTCGTCAGAA GGCTATCGCC ACAGCGCACG AACAATTACG GGCCTGCGGT
TTCACCTGGC TGGACACCCA ATTGACGGCA GCCGACGAGG TCTATGCCGG GGGTGAAGCA
CCGGAAAACT GCTTTATCGG CGGTGGAGCG CAAAGCTGGC AAACCGTTCT CGCCTCCCTG
AGGGCATTGG GTGCGCCAGC GGTGGCACCG AACGCCCCGG ACAAGGCCAC CCGTCTGGTG
TGGGCGGTGA CCTTGAATGA CGACGGTGCG ATTCAGGACA TTCAACCCCT GGAACAGAAA
CAGGGCGCGC GTGGCTGGGG TACACCCAAA CCCATCACAT TGGCCAAACT CGCCAACAGC
CAGCGGCTGG AACCCTGGGA TGCACAGGTG GTCCTGGCCA TTCATGCGCG ACAGGGTCGT
TCGCGTGACT ACTTCATGGA TCGGGCCGCT GCCATCCTGG CTCTCGTAGG ACACCCTTCC
GTGGTGATGT CTGATGCGAT GGATATTCCC GTAGATGTAG TGGCGGGTAC CCCCGACATT
GAGGTCACCC ACGATGGGAA ACGATACATT CTGGAAGTGC GCCCCAATCT GCGTGCGGCC
CCGGATACCC GCAACGGATA CTTTGCCGAT GGCAGTCTTG AAAAACGGGA GCAGGAAGCC
TTGCGCGCCA TCACGGTCGT ACGCGACTCC CCGCAACGGA TCCGTGTGGT CCAGTTTACC
CCGGCCCAGC GCCATGCCGT CCAGCTCATG TCCGGTCGTC TCAGCATACC GGATGAAGCA
CAGCCGGAAC TACAGCAAAC GCTGGAATCA TTGGCCGGTC ATTTTCAGAT ACAGTCCGAC
CATGCGACGG CAACCCACGA AATGGACGCG GACCCGCATT TGCGCGCCGA GCTTTCACCG
GCGGGCGATG GCCTCATGCT GCGTCTGGTG GTGGCTCCGC TGGGACTGGA TGGTCCCCGG
CTGATGCCCG GCAGTGGACA TGCGCGGGTG ATGGCTGCAG TGAAAGGGGA GACCTTCGGA
GCGAACCGCG ATCTGGATGC CGAACGCCAG CATTTGAACG CCGTGCTGGA TGCTCTGCCC
TTCCTGTCCG CCCCGGGCCA AGGGGATGTT GTGTGCGAAT GGGTCGTGGA TGACCCGGAA
TCGGCTTTGT CCCTGGTGGA AGTCCTGCCG ACCTTGTCCG CAGTGGCAGC CGTGGATTGG
CCGCGCGGCA AGGCGTTTCG GGTACTGACG GTGAACGCTC GACAACTCAG CGTACAGATC
AGCAGCGGTC GCGACTGGTT TGCCCTCAAA GGGCGCGCGC AGGTGGAAGA GGACCGGGTA
CTGGAACTGG AAGCTCTACT TGCCGCCGCT GCCGGAAACA GTCGGTTCGT GCCGATGGGT
CAGGGGCTTT ATGTCGCGCT GACCCGGGAT TTGCGGGAGC GTTTAAGGGA TTTGTCCGCC
ATTGCCGAGC ATCGCGCCGA CGGTTTGCGG GTGCCGACCC TCGCCGCTTC CTGGCTCAAG
GAAACGCTGG AAGGCGCGGC CACCAAAGCG GATAAGGGTT TTCTGGAGAA AGTCGAACGC
TTGCGCGCCG CCCAGGATCG GTTGCCAGCA TTGCCGACCA GCCTACAGGC CGACCTGCGG
CCCTATCAGG AGGAGGGCTA TGTCTGGGCC ATGCGTCTGG CGGAAGCGGG CTTTGGGGCC
TGCCTGGCCG ATGACATGGG ATTGGGCAAG ACCCTGCAGG CCATCGCCGT GATGTTGGCC
CGCGCGGATG ACGGACCTGC ACTGGTGATA GCGCCCACCT CGGTGTGCGG CAACTGGCTG
GCGGAAACGC GGCGTTTCGC ACCCACCCTG CAGCCTTTCC TTTACGGGGA AAGTGATCGC
GACGACCTGC TCAAAAAAGC AGGTCCCATG GATGTGGTGA TCGTGTCCTA CACCATGGTT
CAGCAAGCCC AGGAAGCCTT TGCCGCACGC GACTGGCATA CGCTGATCGT CGATGAGGCG
CAGGTCATCA AGAATGCCGT AGCCAAGCGG TCCCAAGCCA TTTTTCAGAT ACCGGCGGAC
TTCCGGATGG CGCTTTCCGG CACTCCCGTG GAAAACCGCC TGGCCGAATT GTGGTCCATC
ATGCGTTTCT GCAATCCAGG GCTGCTGGGG CCATTGTCGC GCTTCAATGA GCGCTTTGCA
GGCCCCATCG AGCGTAACCG CGATCGGGAT GCGCAACGAC TGCTGCGCCG TCTGATTGCC
CCATTTGTAC TGCGGCGCAC GAAATCCCAG GTGCTGGATG ACCTGCCACC GCGCACGGAA
CTGGTGTTGT CCCTGGCGCT GGAGGGGGCG GAATCGGCGC ACTATGAGGC ATTGCGACGG
CAGGCCATTG TCGAAGCCGA AGCGGCCATC GCGCAATCCG GATCGCAGGC CCATTTTCAT
ATTCTCGCGC AACTTACCAA ACTGCGCCGG GCCGCCTGTG ATCCACGGTT GGTGAGCCCC
AATCTGGACA TCGTCGGCGC CAAGGTGCGT ACTTTCGCGG ATCTCGCTGG TGATCTCTCG
GCCAATGGAC ACAAGGCGCT AGTGTTCAGC CAATTTGTGG ATTTTCTGAC CCTGCTGCGT
GAACCACTGG ACGCGGCGGG AATTCCCTAC CAGTATCTGG ACGGGTCCAC ACCGGTTGCC
GACCGCGAAC GGCGCATCCG GGACTTTCAG GCGGAAAAAG GGAACCTGTT TCTGATCAGC
CTGAAAGCTG GAGGATTTGG GTTGAACCTG ACCGCCGCGG ACTATGTCAT CATTACTGAC
CCCTGGTGGA ACCCCGCCGC GGAAGATCAA GCCATGGGCC GTGCGCATAG GATAGGTCAA
TTGCGACCGG TGACGGTCTA CCGGCTGGTC GCACAGGGAA CACTGGAGGA GCAGATCATT
GCGCTGCATC ATGACAAACG GGCGCTGGCC GATGGCGTGC TGGCCGATAG CGGTGAAGCC
ATGAGTTTGC CTTCCCAGGA TGATCTGCTG TCCCTGATGC GGGGGACAGC AGATGAGGCC
AGATAA
 
Protein sequence
MAITLSQDAQ KVMQASALIW TWHPANLTLD ALGALIMKQA HGKAFTHAAV VDARAELFAA 
GLLVDQVVRP AYARLADSVR LKQYRELLNR FTPEVLRQAL IRVVELDTKR SHGWPRLARE
TGIALLRLGV YTGSTPQEME TLWRQLRVIY AWKELIAPAC VDGFDPDRMS GVDARFREII
LHQAFNAFSH QWDASALPAF QWLMTQPRES QMSPALRYPL AEALLHRGEL GHLRDVLRDD
ENPEAEALRA CALVQEGQWA AAQKMFEPAL KALRQETGAR KQLLPETILW MYPLCLLAQQ
TPNHLLLARK FCITESGSRN PSTLDPWGAW VHGIDVRLGD AALNSHALFH TGYSPLALLW
FALLRAWLGP KVVPAVTDKR QKDLRQKAIA TAHEQLRACG FTWLDTQLTA ADEVYAGGEA
PENCFIGGGA QSWQTVLASL RALGAPAVAP NAPDKATRLV WAVTLNDDGA IQDIQPLEQK
QGARGWGTPK PITLAKLANS QRLEPWDAQV VLAIHARQGR SRDYFMDRAA AILALVGHPS
VVMSDAMDIP VDVVAGTPDI EVTHDGKRYI LEVRPNLRAA PDTRNGYFAD GSLEKREQEA
LRAITVVRDS PQRIRVVQFT PAQRHAVQLM SGRLSIPDEA QPELQQTLES LAGHFQIQSD
HATATHEMDA DPHLRAELSP AGDGLMLRLV VAPLGLDGPR LMPGSGHARV MAAVKGETFG
ANRDLDAERQ HLNAVLDALP FLSAPGQGDV VCEWVVDDPE SALSLVEVLP TLSAVAAVDW
PRGKAFRVLT VNARQLSVQI SSGRDWFALK GRAQVEEDRV LELEALLAAA AGNSRFVPMG
QGLYVALTRD LRERLRDLSA IAEHRADGLR VPTLAASWLK ETLEGAATKA DKGFLEKVER
LRAAQDRLPA LPTSLQADLR PYQEEGYVWA MRLAEAGFGA CLADDMGLGK TLQAIAVMLA
RADDGPALVI APTSVCGNWL AETRRFAPTL QPFLYGESDR DDLLKKAGPM DVVIVSYTMV
QQAQEAFAAR DWHTLIVDEA QVIKNAVAKR SQAIFQIPAD FRMALSGTPV ENRLAELWSI
MRFCNPGLLG PLSRFNERFA GPIERNRDRD AQRLLRRLIA PFVLRRTKSQ VLDDLPPRTE
LVLSLALEGA ESAHYEALRR QAIVEAEAAI AQSGSQAHFH ILAQLTKLRR AACDPRLVSP
NLDIVGAKVR TFADLAGDLS ANGHKALVFS QFVDFLTLLR EPLDAAGIPY QYLDGSTPVA
DRERRIRDFQ AEKGNLFLIS LKAGGFGLNL TAADYVIITD PWWNPAAEDQ AMGRAHRIGQ
LRPVTVYRLV AQGTLEEQII ALHHDKRALA DGVLADSGEA MSLPSQDDLL SLMRGTADEA
R