| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1208 |
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| Symbol | |
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| ID | 7136525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 1051042 |
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| End bp | 1054017 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643529605 |
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| Product | outer membrane autotransporter TapA |
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| Protein accession | YP_002425645 |
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| Protein GI | 218667765 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCAA CCTACCGTTT AATTTTTAAC CGTGCCCTCG GCTGCCTGCA GGTCGCCTCG
GAGTTGGCCA AGACCGGCGG GGGCGCTGCC GGAGGGGTGG TCGGTGCGGG GGTGCGAGGT
GCTCCGGCGG TGGATAAGAA TCAGGTGCCG GCCCTGGGCC TGCTCCTGCG ACAGATTCTG
GCCGTATTGC AGCCGGCGGT ACCCCTTTTG ATGGTGGGGG CGGGCGTGTT AGCTCCCGGT
CTTACCGACG CGGCGACCGC AAAATACATC AGCAGCAGTA TCAGCAACCT CACCATTACC
GGCAGTGGCA CGAGTCAGGT CAGATTGATA CCCGGCGGCA CCATCTCCGG AACGCTGGCC
AACCAGGGCA CCATTAGTGG GGCTTCGGCA GCCGTCAGCC AAGTTTCTGC TACCGGTGGC
ATTGGCACCC TGAGCAACAC TGGGACCATA TCTGGCACTA AGCAAGGCGT GTTGAATGGT
GGCAGTATTG GTTTTCTACA GAATAGCGGT GGCCTCATTC AGGGCGGTAT CGTCGGGGTC
TCTAACAATA GCAGTACCAG TCAGATAGGC ACGTTACTCA ATCAGGGGAC CATCAGCGGT
AAGAGCTTTG GCGTGAGCAA TTACGGCACC ATTTCCAACC TGACCAATGA CGGGATTATT
AGCGCGTCCA ATCCGTCTAA CTCTTACAGC AAAGCGGCGC TACTAAGTAA TGGCGGCACC
ATTGGACTAT TGAGTAACAG TGGAACGATC AATGGCGGTA GTGCGCTTGC CATATTAACT
TCATCTGGCC TCATTGGTAC GTTCAATAAT GATGGCGTGA TTACCAATAC CGGTTCGTCG
GCTGCGGTGG TGGAGGTGGG AAATACCGGC ACGATCTCCA ACGGCGGGAC CATCGTCGGG
GCAAGAACAG GTTTGGCTAT CAATGGCCAG GTTTCGACTG TGACTAACAC CGGAACAATC
AGTGGTGTGC AGGTTATGTT TGGAGGGTTC GCTTCTGCCA TCAATAATTC TGGCCTGTTG
GGAGGACCTA ACAGCCACAC AGGCATTGCG TTAATAACTA AGTCATCCTT GTTTAATGGC
TCTTTGGCTG GCGTGCAGTC CACTTTGACA AATTCCGGTA TCATTCAGGG AGAAAACTAT
GCCATCTCGA TTAGCAGCAA GCCGGCGACG GTCATTCTCG ATTCGGGTAG CGAAGTTATC
GGTACTGTAA ACGCCGGTAC CACTGCCAGT ACGTTTTTGT TGAGTGGCGC GCAAAGCTGG
GGTTCTGGAT CTCCCATCAT CGCGCCCCAG AGCACCCTTA CCATCACCCC GTCGGGCGAT
GTAACTACGG CTGATATGTG GAGTGTGGCG ACGGTAAACA ATCAAGGAAC GCTGGCAGTG
GGCGTTTTTG CGACGCCAAC GGGGGGTGGC ATCAGCCCTG CAAGCCAGAC CATCGCGGGT
AACTACGCGC AGAGCGCCGG AGGGGTTCTG CAAATGGCCA TTACGCCCGC GGATAGCACG
GCAGGCACCG ACTACAGTCA GCTTGTGGTG ACCGGAACTG CAAACCTGGC GGGTACCCTG
GATGTCGTTC CCAACGGTGC GGCTTCGGCC TATACGGTAG GGGCAAATTA TGACCTGATT
CATGCCGGAA GCATCGTGGG CAGCTTTGGC ACCGTTTCGG GCATGCAGGC GTTGGCGAAT
TATGTCTCCC CCCAGATGAG CTACAGCGCC ACGGATGCGA CGCTCAAGAT GGCGGTGGCT
GGCACGCCGA CGCCTGCACC TGCACCTGCA CCTGCACCTG CACCTGCACC TGCACCTGCA
CCTGCACCTG CACCTGCACC TGCACCTGCA CCTGCACCTG CACCTGCACC TGCTCCTGCT
CCTGCTCCTG CTCCTGCTCC TGCTCCTGCT CCTGCTCCTG CACCTGCACC TGCACCTGCA
CCTGCACCTG CACCTGCACC CGCACCCGCA CCTGCACCCG CACCCGCACC CGCACCCGCA
CCTGCACCCG CACCTGCACC CGGCGTAACG TTGAGTAATG CCCCAGCATT TCACAGTGGA
CGCGCGGTAG CTGCTTCCAC CTACGCGGTG AATGTCGGGG GTGATGCGAT CGTCTCCAGC
CTGCTGGATG GTGCGGGTCA GGTGCAGGGT TCCGATGGAC CGCGCTTTAC CGACAGCCGG
ATTGGCAGTT GGGTGAAAGG CTTCGGCGCC TTCGGTCGCG CCAACGGCGC CTCGGTAGAG
AACTATGGCG GTATTGCTGG CTACGGCCTG GCGATCAACC ATCACCTGGT TCTGGGTGCC
GCATTTGCCG GATCGGGCAC GGGTACAAAT ACCGACGCGC AGCAGGTCAG TACCAATAGC
TTCGGCGGAT TTGCCTACGC CATCGACACC CTGGGGCAAT TGCGCTTGTC AACCACCCTG
GGGGCCGGGT ATCTGCATCA GTCGAGTAGC CGCAATATTT TCAATGCTCA GAACCAGTCC
ATATACGAAA CTGCCGTCGG GGCTACGAAC GGCTGGTATT TCGGAGCCGG CTTGCAGGCA
CAGTACCTGA TTCCACTGGG ACAAAATTTC CTGATGCCCT ATGGCCGCAT CGACTACGTG
CACACCTATG TCAATGGATT CCAGGAAAAT GGCGCCAATA AACTGGTGAA CCTGAACATT
GGCTACGGTT CATTGAATAC CAATGTCGCG GCCTTCAGCG GCGGGCTGCG GGCGGGTACG
GATCTTTCCT TGGGGAGCAT GACCCTGATT CCCTGGGTGT CCGTGGGTGG TACCGGCTAT
GCGGGGACCC TCAAGGTCGC CCAGGTGGAA ACCGTTGGCT TAACCAGCAC CACAGAAACC
GGACTGGTCA CGCCTAATGG CGCGTTGGAT ACGGGAGCGG GCGTCACGCT GCGTGGGCAT
CATACCCCGT GGACCGTGAA ACTGGCCTAT AACGGCCAGT TTGCTGGAGA TGTGCATCTC
AATACCTTTG ACCTGCTGGC GAATTATCGC TGGTAA
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| Protein sequence | MNATYRLIFN RALGCLQVAS ELAKTGGGAA GGVVGAGVRG APAVDKNQVP ALGLLLRQIL
AVLQPAVPLL MVGAGVLAPG LTDAATAKYI SSSISNLTIT GSGTSQVRLI PGGTISGTLA
NQGTISGASA AVSQVSATGG IGTLSNTGTI SGTKQGVLNG GSIGFLQNSG GLIQGGIVGV
SNNSSTSQIG TLLNQGTISG KSFGVSNYGT ISNLTNDGII SASNPSNSYS KAALLSNGGT
IGLLSNSGTI NGGSALAILT SSGLIGTFNN DGVITNTGSS AAVVEVGNTG TISNGGTIVG
ARTGLAINGQ VSTVTNTGTI SGVQVMFGGF ASAINNSGLL GGPNSHTGIA LITKSSLFNG
SLAGVQSTLT NSGIIQGENY AISISSKPAT VILDSGSEVI GTVNAGTTAS TFLLSGAQSW
GSGSPIIAPQ STLTITPSGD VTTADMWSVA TVNNQGTLAV GVFATPTGGG ISPASQTIAG
NYAQSAGGVL QMAITPADST AGTDYSQLVV TGTANLAGTL DVVPNGAASA YTVGANYDLI
HAGSIVGSFG TVSGMQALAN YVSPQMSYSA TDATLKMAVA GTPTPAPAPA PAPAPAPAPA
PAPAPAPAPA PAPAPAPAPA PAPAPAPAPA PAPAPAPAPA PAPAPAPAPA PAPAPAPAPA
PAPAPAPGVT LSNAPAFHSG RAVAASTYAV NVGGDAIVSS LLDGAGQVQG SDGPRFTDSR
IGSWVKGFGA FGRANGASVE NYGGIAGYGL AINHHLVLGA AFAGSGTGTN TDAQQVSTNS
FGGFAYAIDT LGQLRLSTTL GAGYLHQSSS RNIFNAQNQS IYETAVGATN GWYFGAGLQA
QYLIPLGQNF LMPYGRIDYV HTYVNGFQEN GANKLVNLNI GYGSLNTNVA AFSGGLRAGT
DLSLGSMTLI PWVSVGGTGY AGTLKVAQVE TVGLTSTTET GLVTPNGALD TGAGVTLRGH
HTPWTVKLAY NGQFAGDVHL NTFDLLANYR W
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