| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1106 |
|---|
| Symbol | |
|---|
| ID | 7136826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 997209 |
|---|
| End bp | 998858 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643529503 |
|---|
| Product | transposon transposase |
|---|
| Protein accession | YP_002425578 |
|---|
| Protein GI | 218665128 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.718118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCACGT TACATACCCG CATCGCACGC ATCTCACCAG AACAGGATTC GGCGTTATCC
GCCTATGCGG AGCGGTTCAA CCAGGTTGCG CATCATCTGG CTGCGGATAT GGCCAAAGAG
CAGCGCACGG GGCCTTCATT CAAAAACGCC TATCTCCGTC GATTCGACAT CACCGCCCGA
CAATTCAACG CCGTGCGCCA GTACGTCGAA GGTTTGGCAT CGAATCGGGT GGAGAACCTC
AAAAACCAGG AAAACACTCT GAGCGGCAAG ATTGCGGCAA CGCAAAAACT CCTGCCGAAA
ATCGAAAAGC AGATTGCCAA AGCTCGGAAA GCTGGTGAAT CTCCAGAAAA AATTCAGCGT
CTCGAAAATC GTTTGCACCA GAAGAAACGG AAGATGGGCA ACCTGCTGGA ACGGCAATCC
AAAGTGATCC AAGAGATGCA TCGCCCGTTT GCTTCCGGGA TATGCTTTGG CGGAAGGTCA
CTGTTCCACA GGCAATATCA TCTGGAAGAA AACGGTTACA AGGACCATGC GGAATGGTTG
TCCGACTGGA AAGCCGCGCG AGTCAGCCAG TTCTTTGTAT TGGGTTCGAG AGACGAGACA
GGCGGCTGTC AGGGTTGTGT TGCCCGCATT CAGGCAGATG GCACGTTTCT ACTGGATTTG
CGCTTACCTG GAGAAAATGG TGAGCGTGTT ACTATTGGAC CGCTGCGCTT TCCCTATCAG
GAAGAAAAAT TGCGCTCGGC CCTCTTGGCG CATGCGGAGT TATCCAAGAA AACGTTGCCC
AAAAAGACCT TTACCTCAAA GGATGGCAAG TCCTATTCGC GCATTGTCTA TCCAGACCAT
CTTAGTGCGT TATCCTGGCG CTTCCAGCAG GACAGGAAGG GTTGGCGGGT GCTGGTGAGT
TTTGATGAAC CACAAGTAGC CGTGACGACC CATGCAAAAG TGGGTGTGCT GGCCGTAGAC
CTGAACGCGG ACCATCTGGC CTGGGCGGAA CTGGACCGGT TCGGCAATCC GGTGGCAACG
GGAAGCATTC CCTGTGTCAC TTACGGAAAG ACGACGGAGC ATGCGGCAGC CATTATTGAA
GGTGCCGCCA TTACACTGTC GAATCGCGCG AAGCAGGCCG GCAAGTCGCT GGTTCTGGAA
AGACTGGACT TTTCCAAAAA GAAAGGGCAG ATCACCGAAG TGGACGGCGC GCGGTATGCG
CGGATGTTGT CCAGTCTGTC TTACAGAAAG ATTCACACTG CCATCAGCGT TCGTGCCGCT
AAGGATGGGG TGGCGGTCAA AATGGTGAAC CCGGCCTATA CATCGGTATT GGGCCGTTTG
CATTGGGCGG ATCGCTACGG ATTGACGGTC CACGAAGGGG CGGCAGTAGC GATCGGTCGT
AGAGAATTGC GTTTGCGGGA AGTCCCGGCG CATCGTGTGG TGCATGGAGA GAACGTCTTC
AAGGCACCGG ACGGTAGGAA TGGTCATGTC ACCCTGGTCG CACCCGTGCG GAAGCGGCCC
AGGCATGTAT GGTCGTACCT CAGCCAGGTG AACCGCAAAC TCAAAGCGGC GCTTGCAGCG
CAGCGCGAGG CGAGAAAACT CGACCCTCCC GGGCACGCGG TATCGGACGC AAGGAAGATA
TCAAACGCCC CGGTTGTGGC GGTGGCTTAG
|
|---|
| Protein sequence | MITLHTRIAR ISPEQDSALS AYAERFNQVA HHLAADMAKE QRTGPSFKNA YLRRFDITAR
QFNAVRQYVE GLASNRVENL KNQENTLSGK IAATQKLLPK IEKQIAKARK AGESPEKIQR
LENRLHQKKR KMGNLLERQS KVIQEMHRPF ASGICFGGRS LFHRQYHLEE NGYKDHAEWL
SDWKAARVSQ FFVLGSRDET GGCQGCVARI QADGTFLLDL RLPGENGERV TIGPLRFPYQ
EEKLRSALLA HAELSKKTLP KKTFTSKDGK SYSRIVYPDH LSALSWRFQQ DRKGWRVLVS
FDEPQVAVTT HAKVGVLAVD LNADHLAWAE LDRFGNPVAT GSIPCVTYGK TTEHAAAIIE
GAAITLSNRA KQAGKSLVLE RLDFSKKKGQ ITEVDGARYA RMLSSLSYRK IHTAISVRAA
KDGVAVKMVN PAYTSVLGRL HWADRYGLTV HEGAAVAIGR RELRLREVPA HRVVHGENVF
KAPDGRNGHV TLVAPVRKRP RHVWSYLSQV NRKLKAALAA QREARKLDPP GHAVSDARKI
SNAPVVAVA
|
|---|
| |