Gene AFE_1079 details

Gene Information

• Locus tag: AFE_1079
• Symbol: traE
• ID: 7134822
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 971532
• End bp: 972146
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643529476
• Product: type IV conjugative transfer system protein TraE
• Protein accession: YP_002425551
• Protein GI: 218667442
• TIGRFAM ID: [TIGR02761] type IV conjugative transfer system protein TraE

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.360981
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAAATTCG AACTGTTCAA AAAGGATTAC GAAGGCCTGC TCCGCAACAA CCGCGCGTTC 
CTGATCGTCA TTGGCGTTCT GGCGGTAGTG GTGCTGATGC AGCAATGGGC CATCGTCACG 
GAAAAAACGC GCATGGTCTT GGTGCCGCCC TACATCGACA AGGCGGTGAA GATCGGCTAT 
GCCAGCGCTG ACGCCGATTA TTACGAGTCC TGGGGGCTGT ATGTTTCGGA ACTGATGGGC 
AACCTCACCC CGGGCGACGC GCCGTTTGTC GAAAAGGCGA TGGGCAAACT CTTTTCTTCC 
GTGAGTTACG AAGGGGTGAA GTCGCGGATC GCGCAAAGCG CGGCTGAAGA GGCCAACGCG 
GATGCCACGT TCGCTTTTGA GGCGAAGTCG GTGATCTGGC AAAGCCAGAC CGGCACCGTG 
TTCGTGCATG GCACGCTGCG CCAAGTCAAT GGCGCTGGCC GGACCATATC CGCCACCCCG 
TTCACCTTTT CCATGCGGGT ACATATCGCC GCTGGAAGGC CTGTGCTGGA CGATTTCCAC 
TCTTATGCCG GAAGTCCGCA CACCATTCAG TGGAAACTGC ATCACATCGT CAAAAAGCAA 
GGAGGCGCCT CTTGA 

 

Protein sequence

MKFELFKKDY EGLLRNNRAF LIVIGVLAVV VLMQQWAIVT EKTRMVLVPP YIDKAVKIGY 
ASADADYYES WGLYVSELMG NLTPGDAPFV EKAMGKLFSS VSYEGVKSRI AQSAAEEANA 
DATFAFEAKS VIWQSQTGTV FVHGTLRQVN GAGRTISATP FTFSMRVHIA AGRPVLDDFH 
SYAGSPHTIQ WKLHHIVKKQ GGAS