| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_1047 |
|---|
| Symbol | |
|---|
| ID | 7136052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 943788 |
|---|
| End bp | 945923 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643529444 |
|---|
| Product | helicase, RecD/TraA family |
|---|
| Protein accession | YP_002425519 |
|---|
| Protein GI | 218667869 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.604739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAAA TGCAGACGCT CATCGGCCAG GTCACCCGCC TTATCTTCTC AGGCAAGGCG
GATTCCTTTC GCATTTTTGA GGTGCAGATC AAGGGCGCGA ACAAGCGCGA GATTGTCACC
GGCGAGTGGC AACGGGCCCG TGTGGGCGCG AACATCGAAG CGGCGGGAAC CTGGGAGAAG
CGCAAAGGAA AGGATGAAAT TCAGTTCAAA GCCCGTTCTA TTCTGGAAAT CGTACCGACA
AGCGCCGACA GCATTTTGTC TTGGCTTGAG GGCGGGGCGG TAAAGGGCAT TGGCAAGGTG
TCCGCGAAAA AGCTGGTGGC CTGCTTCGGC GCTGGATTGC TGGAGATTCT GGACCAGCAT
CCAGAACGGA TCGTGGAGGC CGGTATCGGC AAGAAACAGC GCGAAAAGAT TATCGAGGGC
TGGAAAATCG CGTCCGCCAC CAGAATCATC ATGCAGTTTC TTCGGGAAGT CGGGATTGGC
CCGGAACGCT CCAACGCGGT ATGGCGCCAG TTCAAGGATC ACCCCGCCAT CGCTGGCCAG
CCGGCGGTGC TGGTGGCCCG GCTGCGCAAC AACCCCTATC GCCTGATCCG CGTGCGCGGC
ATCGGGTTCT CGTTGGCCGA CCAGGCGGCC GGCAAACTGG GCATTCGCGC CGACGCGGAT
TATCGGGTGG ACGCGGGGAT CGAGCACACT CTGCAAACTC GCACCGAAGA CGGTCACGTT
TGGACTCCCG AGCCGACGTT GCTGGGCCTT TGCAAAGAAT TGCTGGGCGT CAGCCAGGAA
AAGATCGTGG CGCGCATCCA GGTGATGCAG GAAGCACAGC AGATCGCGAC TGAACTGGGC
GCGCCTAATC GCTTCGCCAG CGTACGTCTT TCCAGAATGG AAATTTCCCT GGCGGCCAAG
ATTCGCTCCC TGTCTGGTCC GGCGCCCAAG AAAACGATGC GCTTCCCCGC CGGATTCGTT
CCGGATCCCA CGCAAATCGA GGCGCTGAAC CAGATCAGCG ATCGCAAGCT GGCGATTCTG
GCCGGCGGGC CAGGCATGGG AAAGACCACC CTACTCAAGA CCTGCGCACA GTCGGCAGTG
GCGAGCGGCA TGAGGGTTGC TCTTTGCGCC CCAACCGGCC GTGCGGCCAA ACGCATGAAC
GAGGCGACGG GCATGGAGGC CAAGACCATT CATCGGCTGT TGGAGATGAA GAGGGGTGGG
CTGGCGGAGC GTAATCGGGA CAACCCTATC GAAGCGGACT GGATCATCGT GGACGAGGTC
TCCATGCTGG ATATGGAGTT GGCCTGGAAG CTGTTTGACG CCATTCCGGC CCGTGCCCGC
GTGCTGCTGG TCGGCGATCC GGACCAGTTG CCTTCCGTGG GCCCCGGGCA AGTTCTGGCC
GATCTCATTG CCTGCGGCAA GGTTACGGTG GCCAGGTTGA GCAAGATCTT CCGGCAGCAA
GCCGGGTCCG GTATTCCGGT GATGGCCACC CAGGTCATTC AGGGCGTCGT GCCGAACCTG
GATCCCGATT CGTCGGATTG TCCGTTCGTG GATGCAGAAT GCATCGGGGA AGAAAGCGAG
GAGGCGACAG CGGTGGTGGT GCGGCGCATC GTCCAAGAGT CGGAAAAACT GGGCAGCCGC
ATGCAGGCGC TGGCGCCCAT GCGGAACGGT CCGCTGGGCA CGCTGAAGCT CAACCAGGCC
TTGCGTGAGG CGTTCAACCC GGATGCCGGG CAGCCGCACC GGGGCCGGTT CCGGCTGGGG
GACTGGGTAA TTCAGACGCG CAACAACTAC GACCTGGATG TCTATAACGG CGATCTGGGT
ACCGTGGTGG CCATAGAGGA GGGCGACGAA CAGGCCGTGG TGGTGGATTT CGAGGATCGC
GTCGTCCGCT ATGAGGATAA TGAGGACTTG CGGGATCTTG ATCACGCGTA TTGCCTGACC
ATCCACAAGT CCCAGGGTGG CCAGTTTCCC GGGGTCGCCA TGGTGGCCAC TACCGCGCAC
TTTGTCATGC TCAAGCGCAA TCTGCTGTAC ACGGGCATGA CGCGGGCCGA GAAGCATCTG
CTGCTGATCT CGACGAAAAG GGCCCTGCAG ATCGCGTGTA AGAAATCCGG CATTGAGAAG
CGGGACACGC TGTTGGCCCA GAGGATCGGC GGATGA
|
|---|
| Protein sequence | MPEMQTLIGQ VTRLIFSGKA DSFRIFEVQI KGANKREIVT GEWQRARVGA NIEAAGTWEK
RKGKDEIQFK ARSILEIVPT SADSILSWLE GGAVKGIGKV SAKKLVACFG AGLLEILDQH
PERIVEAGIG KKQREKIIEG WKIASATRII MQFLREVGIG PERSNAVWRQ FKDHPAIAGQ
PAVLVARLRN NPYRLIRVRG IGFSLADQAA GKLGIRADAD YRVDAGIEHT LQTRTEDGHV
WTPEPTLLGL CKELLGVSQE KIVARIQVMQ EAQQIATELG APNRFASVRL SRMEISLAAK
IRSLSGPAPK KTMRFPAGFV PDPTQIEALN QISDRKLAIL AGGPGMGKTT LLKTCAQSAV
ASGMRVALCA PTGRAAKRMN EATGMEAKTI HRLLEMKRGG LAERNRDNPI EADWIIVDEV
SMLDMELAWK LFDAIPARAR VLLVGDPDQL PSVGPGQVLA DLIACGKVTV ARLSKIFRQQ
AGSGIPVMAT QVIQGVVPNL DPDSSDCPFV DAECIGEESE EATAVVVRRI VQESEKLGSR
MQALAPMRNG PLGTLKLNQA LREAFNPDAG QPHRGRFRLG DWVIQTRNNY DLDVYNGDLG
TVVAIEEGDE QAVVVDFEDR VVRYEDNEDL RDLDHAYCLT IHKSQGGQFP GVAMVATTAH
FVMLKRNLLY TGMTRAEKHL LLISTKRALQ IACKKSGIEK RDTLLAQRIG G
|
|---|
| |