| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0995 |
|---|
| Symbol | |
|---|
| ID | 7135842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 909231 |
|---|
| End bp | 910280 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643529393 |
|---|
| Product | site-specific recombinase, phage integrase family |
|---|
| Protein accession | YP_002425468 |
|---|
| Protein GI | 218667058 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00503137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTACA AACGTGGTAA AACTTGGTGG ATTAGCTTCA CTACACCCAA CGGGCAGCGC
ATTAGACGCT CGGCTGGAAC AACGGAAAAG GCACAGGCAG AAGAACTCCA CGATAGCCTC
AAGGCCCAGG CCTGGCGGCA GGTCCAATTA GGGGACAGAC CAGCATATAC GTGGGATGAT
GCCGGAGTAC GGTGGCTGGA TGAAAAGGCT CACAAGGCGA GCTTGGTGAC GGATGAAATT
TTTCTGGCGT GGCTACAGGA TCACTTTCGA GGTGTACCCC TTCGTGACCT CAATCGGGAT
CGCATAATGA CCGTTCTCCA AATCAAAAAG ACACAGACAT CAGCGTCCAC CGCAAATCAT
TATATGGCGC TGATCCGTTC CATGCTTCGC GCCGCCGTGG AGTGGGGATG GCTGGATTAT
CCACCACTTT TGCGTCCTTA CCCAACGCCA ACACAAAGAG TGCGATGGTT AACCCCAGAG
CAGGCGGTTC TGCTTCTTAA CGAGTTACCA CCACATTTAC GGGATATGGC GGCGTTTTCC
CTGGCGACAG GTCTCCGCAG ATCAAATGTC ACCGGACTGG AATGGTCTCA GTTGGATCTC
GGGCGAAAAA TCGCCTGGAT ACACGCCGAT CAAGCCAAGG CTAGAAAGCC AATCACGGTA
CCTCTGGATG ATGTTGCGAT ATCCATTCTT CGGGCGCAAA TCGGAAATCA TCCCATTTAT
GTTTTTACTT ATTGTGGGAA ACGGGTCACA CAAGTGAATA CGAAGGCATG GAAAAAAGCC
CTGGAACGGG CAGGGATCGA AAACTTCCGG TGGCATGATC TTCGCCATAC CTGGGCGAGT
TGGCATATCC AGGCTGGAAC TCCGCTCAAC ACCTTGCAGG ATCTCGGAGG GTGGCACTCA
TCGGAGATGG TGCGCAAGTA CGCTCACCTA TCACCGGAAC ACCTCGCCCA GTATGCGCAG
AACGCGGGTC AAAACCTGCA GCCGGCGTAT GGTACAAAAT TGTCACAACC ACACTTGGTC
GAGGAAGCCA AACGCACTGT AACCAGTTGA
|
|---|
| Protein sequence | MLYKRGKTWW ISFTTPNGQR IRRSAGTTEK AQAEELHDSL KAQAWRQVQL GDRPAYTWDD
AGVRWLDEKA HKASLVTDEI FLAWLQDHFR GVPLRDLNRD RIMTVLQIKK TQTSASTANH
YMALIRSMLR AAVEWGWLDY PPLLRPYPTP TQRVRWLTPE QAVLLLNELP PHLRDMAAFS
LATGLRRSNV TGLEWSQLDL GRKIAWIHAD QAKARKPITV PLDDVAISIL RAQIGNHPIY
VFTYCGKRVT QVNTKAWKKA LERAGIENFR WHDLRHTWAS WHIQAGTPLN TLQDLGGWHS
SEMVRKYAHL SPEHLAQYAQ NAGQNLQPAY GTKLSQPHLV EEAKRTVTS
|
|---|
| |