| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0983 |
|---|
| Symbol | |
|---|
| ID | 7136476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 899873 |
|---|
| End bp | 901561 |
|---|
| Gene Length | 1689 bp |
|---|
| Protein Length | 562 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643529381 |
|---|
| Product | ABC transporter, ATP-binding protein, MsbA family |
|---|
| Protein accession | YP_002425457 |
|---|
| Protein GI | 218666325 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGACG CTGGCGCCCG CGCCGCGCTC CGTTCTCCCA GCTTTTACCG CCTGCTCAGT
CTGGTTCGCG CGTACCGGGG ACGCATCGCC GTCGCCATGC TGTTCATGGT GATTTCGGGC
GCGGCCACCG GCGGAGTGGC CTACATGATC AAGCCGGTCC TCGACCGGAT ATTCATCGAC
CGCAACGCCG ACATGCTTAT CTGGCTGCCC CTGGGTGTCA TCGCGATCTA CGCGGTCAAA
GGGAGCGCCG ACTACCTGCA GGCCATCACC CTCGCCCGGG TGGAAGAAGA CATTTTGCGC
CGCCTGCGCG AACGTCTGTT CGCCCACACC CTGCGTCTGC CCCTCGGCGT CCTGATCGAT
AACAGTCACG GCAGCACCCT GTCCCGGATG AGCCTGGACC TGACCTTGTT GCAGCAGGGG
CTGTCGGTGC TGGCGCGCTT CTTTCTATCC ACCTTCCAGA TCATCGCGCT GATGGCGGTG
GTATTTTACA TGAGCTGGAA GCTGGCGCTC ATCAGCTTGG TCACCCTGCC CATCGCGTTT
TATCCCCTGA TTCGTTTCGG GCAGAAATTG CGCCAGCGCG GCGAGCGCCA GCAGGAGCAG
ATGGGCCAGA TCATGGATCA GTTCTCCCAG AGCCTGCGCG GCGCCGAGGT CATCAAAAGT
CAGGGCAGTG AAGCCTTCGA GGCACAACGG TTCGGTGTTC AGGCGCGGCG CTATTTCGAC
CTGATGATGC AGATCGCCCG TATCCAGAAG GCGACCGTCC CTATCATGGA AATGATCGCC
GCGCTGGGCA TCGGGGTCAT CATCTATCTG GGCGGCAGTC AGGTGGTGAA TGGCGACATG
ACGACCGGGG CCTTTTTCAG CTTCCTGACA GCGCTCGGGA TGGTCTACGA GCCGCTGCGC
CAGCTTTCCT CGGCCAACAA TCAACTGCAG CAGGGACTCT CGGCCGCAGA CCGCCTTTTC
GCCTGGCTGG ATCAGCCCGC AGAATCCGGT ACCCGTTCCG CCATCCCGCG CCCCTGGGGC
ACCTGGCAGT GCCACGACCT CCAACTGCAG ATGAGTGGTG AAGCGATTTT GCGCGGACTC
CAGTTCACCA TACCACCGTT GAGCACGACC GCCATCGTCG GTTCCAGCGG CGGTGGAAAA
ACCAGTCTGG CGCGGGTGAT GCTTGGCCTT CTGCCGCCCA GTGGGGGAGA CATCACCGTG
GCGGGGCAAT CCATTCGCGA ACTTCCTTCC GACGATTACC GCAGCTATTT CGCCTTTGTC
GCCCAGGAGC CTGTACTTTT CACCGGCAGC GCTCTTAGCA ATATCGCCTA CGCCGACGCG
CAACCGGACC GCCAACGCGC CGAGGCTGCC GCGCGGCAGG CCCACACCTG GGATTTTCTG
GCCACGACCG GCGGGCTGGA CACGCTGATC AAGGGTAATG GCGGCAATCT TTCCGGGGGA
CAGCGCCAGC GGCTCGCCAT CGCCCGCGCG CTCTATCTGG ATCGCCCCGT ACTGGTCCTC
GACGAGGCCA CCAGCAACCT CGACAGCGAA AGTGAAGAAC ACATCGCGGA GACCCTCAGC
GCTCTCCACG GCCGCAAAAC CATCATCATC ATCGCACACC GTCCGCGCAC CACCCGCCTC
GCCGATCAGA TCATCCGCCT CGAACGCGGC CGGATCGTGG CGGATGACCA GGGGCACGGG
GCCGCATAG
|
|---|
| Protein sequence | MSDAGARAAL RSPSFYRLLS LVRAYRGRIA VAMLFMVISG AATGGVAYMI KPVLDRIFID
RNADMLIWLP LGVIAIYAVK GSADYLQAIT LARVEEDILR RLRERLFAHT LRLPLGVLID
NSHGSTLSRM SLDLTLLQQG LSVLARFFLS TFQIIALMAV VFYMSWKLAL ISLVTLPIAF
YPLIRFGQKL RQRGERQQEQ MGQIMDQFSQ SLRGAEVIKS QGSEAFEAQR FGVQARRYFD
LMMQIARIQK ATVPIMEMIA ALGIGVIIYL GGSQVVNGDM TTGAFFSFLT ALGMVYEPLR
QLSSANNQLQ QGLSAADRLF AWLDQPAESG TRSAIPRPWG TWQCHDLQLQ MSGEAILRGL
QFTIPPLSTT AIVGSSGGGK TSLARVMLGL LPPSGGDITV AGQSIRELPS DDYRSYFAFV
AQEPVLFTGS ALSNIAYADA QPDRQRAEAA ARQAHTWDFL ATTGGLDTLI KGNGGNLSGG
QRQRLAIARA LYLDRPVLVL DEATSNLDSE SEEHIAETLS ALHGRKTIII IAHRPRTTRL
ADQIIRLERG RIVADDQGHG AA
|
|---|
| |