Gene AFE_0967 details

Gene Information

• Locus tag: AFE_0967
• ID: 7135592
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 885340
• End bp: 888753
• Gene Length: 3414 bp
• Protein Length: 1137 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643529365
• Product: type IV pilin biogenesis protein, putative
• Protein accession: YP_002425441
• Protein GI: 218665578

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAA ATCCGCATCA GAAATTCATT GTCAGTGTGC TCTGCCTGTC CATGACCGCC 
GCTCCGCTAG CGAGCTGGAG CAGCTTCGCC CAGGCCAACA ATACCATCAA TATCCTGCCT 
GCCAACCAGC CGCAGGTGAT GATATTGCTG GATAACTCAC AGGGCATGGC GGGCGTCCTG 
CAAGGCCCCA CCGGTCTCTC CGGCGCCATT ATGACCGGCT CCGGCACCGT GCCGGAAAAT 
GCCAATTCGT CCTCACCCGT AAACTATACC GCCAGCGGCT TCACGCCTCC CGCGCTGGGT 
TCGCCCGGAA CCAGTGTGCC TTACTCCGTC CCCTGCAATA CGTCCGGCAT TACCGCCGCT 
GCCCAAAGCG CCTGTGCCTC CGTGGGGGCC TCCGGGGCCT CCAGCGCCTA TATCGACAAC 
TCACAATCCA TGCTCAACGT GGCGGAACAG GCCATCGGCA CGATTATCAA TACACCGGAA 
TATAACAACA ATATGCAGTT CGGGTTGATG GATTATGCTT TGTCTGGCAG GGTATCGCTT 
TATAATACTT GGGCATATTA TATGAGCGAT AATAATGGTT TCTCCTTTGG TACCAGTGCC 
ACGGGAGCCC CATCTGGAGA TGTAACCGTG GCAAATCCCT GTTACCAATC AGGCAGTAAT 
TCATGTATTA ATTTGCAGCA AAACATATTT GGCCAAGGTA ATGGAAGCAT TAGCGATCCG 
TACTTGTATG TTCAAGCCAG CAGTGATGCC CCAGTAATCA ATGACGTGCT TTACGCCATC 
GCCGCTCAAT GGCAACCAGA TGCCACCAAT GCAGTCGGTT GGGGGCCAAA TCCATACGGA 
TTAAATCTGC AAAGTTACAT GACGGGTAAT TCTGGCGTCA ATTTTAGCAA CTATTCAAAC 
GGATTGGTGT CCGGCATGAC TCCCACCAGT GCCGGTTATT TCCCTCTATC TCAGCAAGTG 
TGGGAGTCTC AACGCGGTTA TGCCTTCAAT GCAAACACTT CCTACAATAA GGGCAATATT 
GTCAGTCCCA TATCCGCGAC AAACAGCGCC AATGCGACCA ATATCGCCAA CGCCATTCTC 
CCGGAGGTTT TCCGAACCGA CAAATCCATT AATTACGCTG CAGAGGGGCC GATAACCGCC 
TCCGCCGGCT ATTCCCCCAC GGCTGGCGCC TTCAGTACGG CACTAAGCTA TTACGAGGGA 
AGCCTGCCAA ACCCGCCGCC GGCGACCTGC GGCAGCAAAT ACGTCATTTT CATCACCGAT 
GGGCAGCCCA CCCAAGGTAT GGAACATGGA TATGTATACC CGCCTTTGGG CAGTGCTTCG 
GCGCAAATGT TCGGTGTCAC CTCCATCACC GCCAGCACTT GGAGTTCGAC CAACAACAAC 
GCGGTGGTAG AAACCATTAA TGAAATCCAG GCACTCGCGC AAAAGGGCAT CAAGACCTAT 
GTTTTAGGGG TCGGTTCCGC CGTCAACCCC AATGTGCCAG GTGCAAGTGC TGCCGATCAG 
GCGGAAGCTC TGCAGGGTCA GGCCGTGCTC ACCGCCATGG CTCAGGCGGG TGGCACTAGC 
AACTTCTATG CGGCAACGTC TGCCTCCGAT GTACAGTCCG CCATGAACAG CATCATCGCC 
AACATTCTCG GCAAAAGCGT TTCTGCATCC TATGGCGCAC CGCCTTCCGC AACCGTGGGG 
TCTTTGGAGT TTTTGCTCAA AAATGTCAAT CCGATCACCG GACAAGGCGA CCTCTACGCC 
TATGCGTTAC AGAGCAGCGG TACGCCAAGC ACCAGCGCGT CCTGGGACGC TAACAGCTTC 
ATGAGCAATC GCTCCAGTGC CCTCTATACC ACCACGCCCG GCGGCACGAA TGGGGCAGGA 
ATAGATATCT TGCTGAGCGG TGTCGCCAAG AACACGCCCA GCGCATTCGG CACCCTGCCC 
ACAAGCTTGA CTGCAAGCAC CATTGCCGCC TACACCATAA ATCCGTCTGA CAGTAGCGGC 
GCCTATCTCG GCGGGCGTCA AAGTGGCTGG TATATGGGGT TACCCACCTC CACGCCGCCG 
CAGGTGCTCA CTGCGCCCAA CAACGGACAA CTGCTGGGTG CAGGTGGCAC TACCAACAGT 
TACCTGACCT TCGCCAGCAA TCATGCCAAC CGCCAGAATG CGGTCCTCTT CAGCGATAAT 
GATGGCTTCC TGTACGCGAT GGGCTACAAC AATACTGGCA GCCCGACGCT CCTTTGGGGA 
TGGATGCCTC AGGGCCTGCT GCCGCAACTC CAGAATTACA ACACCTTTTG GCAAGGCACG 
AATATGCAAG GTGGCTTCCA GACGATTGAT GCCACAGTCG CGCCGACCCA ACCGCACACC 
TGGCATACCT ATGTGGCGGG AAGCGCCAGT AACGGTAGCA TTCTCTATGA CATTCAATTG 
ACAGGGACGA CCGCCCCCAA CCTGCAGAGC ACGATATGGG AAGATGACCT GGGCGGCAAT 
TATAGCCAAC CGCAGCCTAG TAATCCGGTC TTTTATCAAT ATCAGACGCC GGGAACCAAG 
AACTTTGGCC AAACCTGGGC ACTATGGGCC GTAAACCAGG CCATCAGCGC TACCAGCAGC 
ACCAGTTATC TGATAGGGGT CAATGTGGGC ACAGGGCAAA GCTTTCAGGA TGCCCTCCCT 
TTTAATAACA CCGCCACCCC CTACATCGAC GCATCAGGAA ATCTTTATCT GGGCGACAAT 
ACCGGTAACA TATACGAAAT ATCCTCGGCT ACATTGCCAG GCTTACTGAC GCCCGGCGCC 
GCAACCCTCA CGTTTGCTAA GGATTTTGTG AATAAAACCG CCGTTGGCAA TTATTCGTCG 
GCATGGTCTG GGAGCCTCAG TGGCAGCAAT CCGGGTGAAG TGCAGTATAT CGGTGGCAGT 
TACTATCAAG GTAAAAACTA TCTGCGTGTA CAAGGACCCA ATGGTATCAC TATTTTTTCT 
CAGCTAAATG GCACTTGGTC ACCAGTATGG ACCGCCTACG CTGGCGGCGC TGGCACCTGG 
AGCAGCGGGG CCTTTACTAC GCAGACCTCT GGTACTAATC CGCCTGTTAC TGCACTGCCA 
TCAGGGTCCG TCGTTTCCGC ACCCGCGTTG ATCAATAGCG GTGCCGTCAT TCTGCCCGTG 
ACCGTGCCAC CATCCGCAAA CTCCTGTGGA AATGGCGATG CTTACTATTA CCTCTATGCC 
CTCAACAACG GCATTTTCCC CAGCGGCACC TTCACCGACA GTACCGGGAC AGCCATTACC 
AACGCACTTT TCGTTGGTTA CGGAACGGCC TTCACGCCCA CCGTCACCAG CTTCAATGGC 
CGTACCTTGT TGCAGGGCGC AGCTAGTAAT ACCGGACCGT CAAAAACATT CCCCACGGGC 
TTTGGTGCTG GACTGCCATT AGGTGGCCCT ACGGGGTGGA AACTTGCTAA TTGA 

 

Protein sequence

MNKNPHQKFI VSVLCLSMTA APLASWSSFA QANNTINILP ANQPQVMILL DNSQGMAGVL 
QGPTGLSGAI MTGSGTVPEN ANSSSPVNYT ASGFTPPALG SPGTSVPYSV PCNTSGITAA 
AQSACASVGA SGASSAYIDN SQSMLNVAEQ AIGTIINTPE YNNNMQFGLM DYALSGRVSL 
YNTWAYYMSD NNGFSFGTSA TGAPSGDVTV ANPCYQSGSN SCINLQQNIF GQGNGSISDP 
YLYVQASSDA PVINDVLYAI AAQWQPDATN AVGWGPNPYG LNLQSYMTGN SGVNFSNYSN 
GLVSGMTPTS AGYFPLSQQV WESQRGYAFN ANTSYNKGNI VSPISATNSA NATNIANAIL 
PEVFRTDKSI NYAAEGPITA SAGYSPTAGA FSTALSYYEG SLPNPPPATC GSKYVIFITD 
GQPTQGMEHG YVYPPLGSAS AQMFGVTSIT ASTWSSTNNN AVVETINEIQ ALAQKGIKTY 
VLGVGSAVNP NVPGASAADQ AEALQGQAVL TAMAQAGGTS NFYAATSASD VQSAMNSIIA 
NILGKSVSAS YGAPPSATVG SLEFLLKNVN PITGQGDLYA YALQSSGTPS TSASWDANSF 
MSNRSSALYT TTPGGTNGAG IDILLSGVAK NTPSAFGTLP TSLTASTIAA YTINPSDSSG 
AYLGGRQSGW YMGLPTSTPP QVLTAPNNGQ LLGAGGTTNS YLTFASNHAN RQNAVLFSDN 
DGFLYAMGYN NTGSPTLLWG WMPQGLLPQL QNYNTFWQGT NMQGGFQTID ATVAPTQPHT 
WHTYVAGSAS NGSILYDIQL TGTTAPNLQS TIWEDDLGGN YSQPQPSNPV FYQYQTPGTK 
NFGQTWALWA VNQAISATSS TSYLIGVNVG TGQSFQDALP FNNTATPYID ASGNLYLGDN 
TGNIYEISSA TLPGLLTPGA ATLTFAKDFV NKTAVGNYSS AWSGSLSGSN PGEVQYIGGS 
YYQGKNYLRV QGPNGITIFS QLNGTWSPVW TAYAGGAGTW SSGAFTTQTS GTNPPVTALP 
SGSVVSAPAL INSGAVILPV TVPPSANSCG NGDAYYYLYA LNNGIFPSGT FTDSTGTAIT 
NALFVGYGTA FTPTVTSFNG RTLLQGAASN TGPSKTFPTG FGAGLPLGGP TGWKLAN