Gene AFE_0948 details

Gene Information

• Locus tag: AFE_0948
• Symbol: thiC
• ID: 7135166
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 864398
• End bp: 866281
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643529346
• Product: thiamine biosynthesis protein ThiC
• Protein accession: YP_002425422
• Protein GI: 218665252
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0422] Thiamine biosynthesis protein ThiC
• TIGRFAM ID: [TIGR00190] thiamine biosynthesis protein ThiC

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTACCC GTCCCACGGA TATGGTGAAT ACTATGCAGG ACGCAGCGGT AACCTGCGGC 
CCGATCCCCG GCTCACACAA GCGTTACCTC GGTGGCGTGC GTTTCCCGGA ATTGCGCATT 
CCCTTGCGGG AGATTCGGCA GAGCGACTCC CGGAAGCGGG ATGGCAGCCT CGAAGTCAAT 
CCGGCCATCC CGGTCTATGA TTGCAGCGGT CCCTACACCG ACCCGGACGT GGTCATCGAT 
ATTCATGCGG GCCTGCCCGC CATGCGCTGG CAATGGTCGC CGACGGATAC CGCCATCGAA 
AGCCGCCCCG AGCCCGGTTC CGCCTATGGT CGCGCCCGTC TGGCGGATGT CCGCACGGCG 
GATCTGCGTT TTCATCATCG CCGCGAAATT CGCCGGGCGG CCAACGGCGG CAACGTCTCC 
CAGATGCACT ATGCGCGGCG CGGTATCATC ACCCCCGAGA TGGAGTTCGT CGCCATCCGC 
GAGAATCAGG GTTTGGAGCA CCTGCGTGCC AGCCATCCGG CGCTGTTTCG CGCCCATCGC 
GGCGAGTCCT TCGGCGCGCA GATCCCCGAC ACCATTACCC CGGAATTTGT CCGCGATGAA 
ATCGCCCGGG GCCGCGCCAT CATCCCCGCC AATATCAATC ACCCGGAACT GGAGCCGATG 
ATCATCGGCC GGAATTTCCT GGTGAAGATC AACGCCAATA TCGGCAACTC CGCGGTCACC 
TCGTCCATTG CCGAAGAAGT GGAAAAAATG GTCTGGTCGA TCCGCTGGGG CGCCGATACG 
GTCATGGATT TATCCACCGG CAGGCATATT CACGAAACCC GCGAATGGAT TATCCGCAAT 
AGCCCGGTTC CCATCGGGAC CGTGCCGATT TATCAGGCCC TGGAGAAGGT CGATGGGAAG 
GCCGAAGACC TCACCTGGGA TTTGTTCCGG GATACACTCA TTGAGCAGGC GGAGCAGGGC 
GTCGATTATT TTACCATCCA TGCCGGTGTG CTGCTGCGTT ATATCCCGCT GACGGCGAAT 
CGTCTTACCG GCATCGTGTC GCGCGGTGGT TCCATCATGG CCAAATGGTG CCTCGCGCAC 
CACCAGGAGA GCTTTCTCTA CACCCATTTT GAAGAAATCT GCGAGATCAT GAAGGCCTAC 
GACGTGAGCT TCTCCCTCGG CGATGGTCTG CGTCCCGGCT CTCTGGCCGA CGCCAATGAC 
GAGGCGCAGT TCGCCGAGCT GCATACCCTG GGTGAACTCA CCCGGATTGC CTGGAAGCAC 
GATGTGCAGG TCATGATCGA AGGCCCCGGC CATGTCCCCA TGCAACTCAT CAAGGCTAAT 
ATGGAGGAGG AGCTACAGCA CTGTTTCGAG GCGCCGTTCT ACACGCTCGG ACCGCTGACC 
ACGGATATTG CCCCCGGCTA TGACCATATT ACCAGCGCCA TCGGCGCCGC GCAGATCGGC 
TGGTACGGGA CCGCCATGCT CTGCTACGTC ACCCCCAAGG AGCATCTCGG CCTGCCGGAT 
AAAAATGACG TGCGGGAAGG GGCCATCACC TACAAGATTG CCGCCCATGC CGCCGACCTG 
GCCAAGGGGC ATCCCGGCGC ACAAGTGCGG GATAACGCCC TGTCCAAGGC GCGTTTTGAG 
TTCCGCTGGG AAGACCAGTT TCACCTCGGA CTGGACCCCG AAAAGGCGCG GGAATATCAC 
GACGAGACCT TACCCCAGGA AGGCGCCAAG GCGGCGCACT TCTGTTCCAT GTGCGGTCCC 
CATTTCTGCT CCATGAAAAT CTCCCAGGAT TTGCAGGAAT ACGCGCAATC CAAGGGTGAA 
GATATCGAGA CGGCACGACT GGAAGGCCTG CAGGAAAAGG CAGAGGATTT CAAGCGGCTG 
GGGAAGAATA TCTACCTTAG ATAA 

 

Protein sequence

MATRPTDMVN TMQDAAVTCG PIPGSHKRYL GGVRFPELRI PLREIRQSDS RKRDGSLEVN 
PAIPVYDCSG PYTDPDVVID IHAGLPAMRW QWSPTDTAIE SRPEPGSAYG RARLADVRTA 
DLRFHHRREI RRAANGGNVS QMHYARRGII TPEMEFVAIR ENQGLEHLRA SHPALFRAHR 
GESFGAQIPD TITPEFVRDE IARGRAIIPA NINHPELEPM IIGRNFLVKI NANIGNSAVT 
SSIAEEVEKM VWSIRWGADT VMDLSTGRHI HETREWIIRN SPVPIGTVPI YQALEKVDGK 
AEDLTWDLFR DTLIEQAEQG VDYFTIHAGV LLRYIPLTAN RLTGIVSRGG SIMAKWCLAH 
HQESFLYTHF EEICEIMKAY DVSFSLGDGL RPGSLADAND EAQFAELHTL GELTRIAWKH 
DVQVMIEGPG HVPMQLIKAN MEEELQHCFE APFYTLGPLT TDIAPGYDHI TSAIGAAQIG 
WYGTAMLCYV TPKEHLGLPD KNDVREGAIT YKIAAHAADL AKGHPGAQVR DNALSKARFE 
FRWEDQFHLG LDPEKAREYH DETLPQEGAK AAHFCSMCGP HFCSMKISQD LQEYAQSKGE 
DIETARLEGL QEKAEDFKRL GKNIYLR