Gene AFE_0942 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0942 
Symbol 
ID7134226 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp857210 
End bp860551 
Gene Length3342 bp 
Protein Length1113 aa 
Translation table11 
GC content61% 
IMG OID643529341 
ProductDNA helicase, SNF2/RAD54 family 
Protein accessionYP_002425417 
Protein GI218667367 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0553] Superfamily II DNA/RNA helicases, SNF2 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTACCA ATAATGACTG GATGAACTGG CACCGCGATG CCAGTGCAAT GCCCACGCTG 
GGGACGTACG GTTACGAAGA TATCCGCAAA TGGGTGGGCG ATCTGGAAAT TCGCAAAGCC
CAACCTTACC AGAAGTCCAT CAGCCATCTG GAGCAGCGTG GCAGCACCGA CCTCAGTGCC
CTGGTGCAGG GCACGGCACA TACGCCATAC CGGGTAGACA TCCACCTCAG CCAAGGGCAT
CTGGTAACCC TGTGTACCTG CCCGGTAGGC AGTCGCTGCA AACACGTCAC CGCGGTGCTC
CTCGCTCTGC TGGCCGGTCG TAGCCACGCT GCGCCGACGC CGGCCCCGGC TTTGCGTCCG
CATGTGATGC AATGGCTGAG CGAACTGCGT TCGCATCTGG ATCCGCCCAA ACCCAAGCCG
CCGACTGCCA CTCATACCCT GTACTGGCTG CTGGAACTGA ACAGCCGACG TCATCAGGGG
CCGGTTCTCA GTTGTCGTAA GGCCCGCCTG AACAAAAGCG GAGAATGTAC CGGTCTCACC
CCCTGGTACA ATTTTGAAGG CGCCCAGCGC CGCCCGCCGA GCTTCATCGA CGACGCGGAC
CAGCGTGCTC TGCGCCGTCT GCTGCTGGAA GACCCCTATG CCAGCCAGAC GGGCGAATTC
GATCTCGGCC CCCGCCACGG TGCCGCAGCT CTCACCATAC TCGCCGGTAC CGGACGCCTC
TTCGCCAATT CGCCAGCCAA CCCGTCCCTG CGACTCGGTG ATCACCGGCC TGGCACACTG
GTCTGGAAGG TCAGCAAGGG CGGGGAACAA TATCCGGCAC TGGAAACCAC GCCACCCGCT
ACCAGCTTCC TGCCCCTGGA TGCGACCTGG TACCTGGATG GGAAGACTGG GGAAATCGGC
CCGATCGAGA CGGACCTGCC GACCACGGTC CTGCGCGATC TGCTGCAAGC CCCGCCCCTC
AATGCGCAAG AAGCCATTCT TTTGCGCGAG ATGCTGGAGC AATCGGTGCC CGGTCTCCCC
GCGCCCGTGG CCGATCCCGG ACAGGGCTTA CGGGAAATCG AAGCGCCTCT GCAAGCCCTG
CTCTGGTGCG ACACTCTGGC CCTCCTCGGT ATTCAGGCAC ACCGCAACTA TGCCGGCCAA
TGGAGTCCTA CCTGTCGCTT CGATTATGCG CAGCCCACAT TTGTGTATGG TCCCGCACGC
ATTGCCGTGG ACGACGACAG TGCCATCCAG ACCCTCAACA ATGGTGAGAT GGTTCGGATA
AAACGCGACA GGACAGCCGA AAAACAGGCA CTGCAGGCAC TCGGAAAAAC AGGTCTGAAA
GCTGTCAGTG CCGGCCTTTT CCACAGTCTG TCGCCGCTGC CTCATCCCAT CTACGGGCTA
GCCAGCGAAG CCGACTGGGA CGGGTTCATG TCAACGAGCG TCGAGACCCT CCGCGAGCAG
GGTTGGGAGG TGCGCTGGCC CGATGGCTTT CGTCACTACT TCCTACAGGT GGATGAATGG
GATATGCAGG TAGATGGTGC CGAGGAGGGG TGGCTGGGTC TCGATGTCGG TATCGTGGTG
GACGGCAAGC GGCTGGCGCT GCCCCCCCTG CTCGGCGCCC TCTTCGCCCG CGACCCGCGC
TGGCTGAATC CAGGCGGTCT CGGTACCATT CCCGATGGTG AGCATATCCA CCTGCACACC
CCGGCGGGCG TGCCGATCCA GACCACGGCG GATCGCCTGA AACCTCTGGT CGGAACCCTC
ATCGATCTGT TCAGCCTGGA CGCCGGGGGG CCTTTGCGGA TGTCCGCCTT TGACGCGCCC
CGCATCGCCC GGCTGGTGGA CGGCAACCAG TGGCGTAGTG AAGGGATGGA TGCCGTGCGT
GCTCTGGCTA GATCTTTGCC TCAAAACGGA GAGATCCCCT CCGTCCCACT GCCCGCAGGT
TTTGCCCTCC CCCTGCGCAG CTATCAACAG GATGGGCTTG CCTGGCTGCA ATTCCTGCGC
GAGCATCATT TGGGCGGCAT TCTCGCGGAC GATATGGGTC TCGGCAAAAC CGCCCAGACC
CTCGCCCATC TGCTGCTGGA AAAAGAAAGT GGCCGCCTCA CGGATCCCGC CCTGATCATC
ATGCCCACCT CTCTGATTCA CAACTGGCGA GAAGAGGCGG CACGCTTCAC TCCCGACCTG
CGGGTGCTCT CCCTGCACGG CAAAGAGCGC AGCAGCCGTT TCGCCCAGAT ACCTGACCAT
GACCTGATTC TTACCACCTA TCCGCTGATC TGGCGGGACG TCGAAACGCT CAGAAATCAG
CACTTTCATC TGCTGATTCT CGATGAGGCA CAGATGGTCA AGAACGCGCG GGGCCGCGCC
GCCGAAGCCA TCCGTGAGAT TCCTACCCGG CATCGGCTTG CCCTCACCGG CACCCCCCTT
GAAAATCATC TCGGCGAACT CTGGGCACAA TTCGACTTCT TCCTGCCCGG CTTTCTCGGC
GACCAGCGCA GTTTCCAACG GGTCTGGCGC GGCCCCATCG AGCGCCACGG AGATGCTGAG
CGTCTGGATT TGTTGGCCCG TCGGGTGCGC CCCTTCATTC TGCGTCGGCG CAAGGAGGAT
GTCGCCAAGG AACTCCCCGA GAAGACCATC ATTATCCGCC CCATGGATAT CGAAGGGGCG
CAGCGCGATC TTTATGAAAC GGTACGCAGC GCCATGGATG AACGGATCCG CCAGGAAATC
GCCGCCAAGG GTTTTCAGCG CAGCCAGATC GTCATCCTGG ACGCGATGCT CAAACTCCGC
CAAGTCTGCT GTGACCCGCG CCTGCTCAAG AGTGAAAAGG CGCGAAAGGT ACAGGACAGC
GCCAAACTCG CCCTGCTCAT GGAGATGATT CCGGAGTTGC TGGCGGAAGG TCGCCAGATT
CTGCTGTTTT CGCAATTCAC CGAGATGCTC GCCCTGATCA GTGCACGCCT CGACAAGATG
CATATCCCTT ACGTGCTGCT CACTGGCAGC ACCCAGGATC GCAAGACGCC CATCGACCGC
TTTCAGCGCG GTGAAGTGCC ACTCTTCCTG ATCAGCCTCA AGGCGGGCGG CGTCGGCCTC
AACCTCACGG CGGCAGACAC CGTGATTCAC TATGACCCGT GGTGGAACCC CGCCGCCGAA
AATCAGGCCA CTGATCGCGC CCACCGCATC GGCCAGAAAC GTCAGGTTTT TGTTTACAAG
CTGATTGTTG CCGGGAGCAT TGAAGAAAAA ATCCTGGCCC TGCAGGAGAA AAAGGCCATT
CTCGCCGCAG GTGTGCTGGA GAAAACGCAA AAAGAAAAGC TCCGTTTCGG CCCCGACGAC
CTGGCCTCCC TGCTCGCGCC GCTACCGGAA GTCTTGCGCT GA
 
Protein sequence
MPTNNDWMNW HRDASAMPTL GTYGYEDIRK WVGDLEIRKA QPYQKSISHL EQRGSTDLSA 
LVQGTAHTPY RVDIHLSQGH LVTLCTCPVG SRCKHVTAVL LALLAGRSHA APTPAPALRP
HVMQWLSELR SHLDPPKPKP PTATHTLYWL LELNSRRHQG PVLSCRKARL NKSGECTGLT
PWYNFEGAQR RPPSFIDDAD QRALRRLLLE DPYASQTGEF DLGPRHGAAA LTILAGTGRL
FANSPANPSL RLGDHRPGTL VWKVSKGGEQ YPALETTPPA TSFLPLDATW YLDGKTGEIG
PIETDLPTTV LRDLLQAPPL NAQEAILLRE MLEQSVPGLP APVADPGQGL REIEAPLQAL
LWCDTLALLG IQAHRNYAGQ WSPTCRFDYA QPTFVYGPAR IAVDDDSAIQ TLNNGEMVRI
KRDRTAEKQA LQALGKTGLK AVSAGLFHSL SPLPHPIYGL ASEADWDGFM STSVETLREQ
GWEVRWPDGF RHYFLQVDEW DMQVDGAEEG WLGLDVGIVV DGKRLALPPL LGALFARDPR
WLNPGGLGTI PDGEHIHLHT PAGVPIQTTA DRLKPLVGTL IDLFSLDAGG PLRMSAFDAP
RIARLVDGNQ WRSEGMDAVR ALARSLPQNG EIPSVPLPAG FALPLRSYQQ DGLAWLQFLR
EHHLGGILAD DMGLGKTAQT LAHLLLEKES GRLTDPALII MPTSLIHNWR EEAARFTPDL
RVLSLHGKER SSRFAQIPDH DLILTTYPLI WRDVETLRNQ HFHLLILDEA QMVKNARGRA
AEAIREIPTR HRLALTGTPL ENHLGELWAQ FDFFLPGFLG DQRSFQRVWR GPIERHGDAE
RLDLLARRVR PFILRRRKED VAKELPEKTI IIRPMDIEGA QRDLYETVRS AMDERIRQEI
AAKGFQRSQI VILDAMLKLR QVCCDPRLLK SEKARKVQDS AKLALLMEMI PELLAEGRQI
LLFSQFTEML ALISARLDKM HIPYVLLTGS TQDRKTPIDR FQRGEVPLFL ISLKAGGVGL
NLTAADTVIH YDPWWNPAAE NQATDRAHRI GQKRQVFVYK LIVAGSIEEK ILALQEKKAI
LAAGVLEKTQ KEKLRFGPDD LASLLAPLPE VLR