| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0738 |
|---|
| Symbol | |
|---|
| ID | 7134223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 667437 |
|---|
| End bp | 668030 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643529144 |
|---|
| Product | type IV pilus biogenesis protein PilN |
|---|
| Protein accession | YP_002425226 |
|---|
| Protein GI | 218666726 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3166] Tfp pilus assembly protein PilN |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0218602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA TCAATCTGCT GCCTTATCGG GAGGCCCAGC GGGTCCAGCG CAGCCAGCTT
TTGGCGCTGG CTCTCGTCGG CATCCTGCTG CTCACCGCGC TGTTCTACTA CGGCATCTAC
AGCATCTTCA GCGCACGCGT TTCCGCCGAA CAGCAAAAAG TGCAGTATCT GCAAAACGTC
ACCACCCAAC TGAATCAAAA AATCGCGTCC GTCGCCGACC TGCGCAAGAA ACGCGACCAA
CTGCTCGCCC GCGAGGACAT CATCACCGAC CTGCAGGACC AGCGGGATAT GGTGGTGCAT
CTCTTCAACA CCCTGGCCAG GGTTACACCC GATGGCGTAT TCCTGACCCA CCTCAAGCAG
GCAGGCGACA GCATTACCGT CGACGGCTAT TCCCAGGCAA ACGATCAGGT CGCGGCGTTC
ATGCGCAACA TCGAGGCCTC CAGGATTTTT GAGAAGCCGG AACTCAACAT CATCAGTAAA
TCCAAACTGG GTAACGAAGA AGTGGGGCAA TTCACGCTGC AGATGAGCAT CCGCACGCCA
ACCGCCGCGC ATAAAAGTGG CGCGCCTGCG CAGAATAAGG ATACCCGGCC ATGA
|
|---|
| Protein sequence | MIRINLLPYR EAQRVQRSQL LALALVGILL LTALFYYGIY SIFSARVSAE QQKVQYLQNV
TTQLNQKIAS VADLRKKRDQ LLAREDIITD LQDQRDMVVH LFNTLARVTP DGVFLTHLKQ
AGDSITVDGY SQANDQVAAF MRNIEASRIF EKPELNIISK SKLGNEEVGQ FTLQMSIRTP
TAAHKSGAPA QNKDTRP
|
|---|
| |