| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0729 |
|---|
| Symbol | gltD |
|---|
| ID | 7136755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 654121 |
|---|
| End bp | 655518 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643529135 |
|---|
| Product | glutamate synthase, small subunit |
|---|
| Protein accession | YP_002425217 |
|---|
| Protein GI | 218666446 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATT TTTCATTCAT CGAAGACCCG CGGCAGGACC CCAAAAAGCT GGACGTGGAA
GAACGCCGCG AAGCCTTTAA GGAAATCTAC CAGAGCTTTG ACCTGGGCAG TGCCCAGCTT
CAGGCCGACC GCTGCCTGCA TTGCGGCAAC CCGTATTGTG AATGGAAGTG CCCGGTGCAC
AACTATATTC CCAACTGGCT GCAACTCATT GTCGAGAATC GTCTGGAAGA AGCGGCCACT
CTGTCCCATC AGACCAATAC CCTGCCGGAA ATCTGTGGCC GCATCTGCCC CCAGGATCGC
CTGTGTGAAG GTGCCTGTAC CCTCAATGAC GGCTTCGGTG CCGTCACCAT CGGCAATCTG
GAAAGGTTCA TCACCGAAGA GGCGCTGGCC CGTGGCTGGC AGCCGCAGAT GCCCGACATC
CCCCCCAATG GCAAACGGGT CGCCGTAGTG GGTGCCGGTC CGGCGGGCCT CGGCTGTGCG
GACATCCTCA ACCGCGCAGG CACCGAAGTG GTCGTCTTTG ACCGCTATCC GGCGGTTGGC
GGCCTGCTCA CCTTCGGCAT CCCGTCCTTC AAACTGGAGA AGGCAGTGGT TGCACGCCGC
GCCAACTTGC TACAGGAAAT GGGTATCCGT TTTCAGCTCG ACACGGAGGT CGGCAGAGAT
ATTTCCCTGG GTAAGCTCCT GGACGATTTT GACGCCGTGT TTCTGGGGAT GGGCACCTAT
ACCGCCAAGA CCGGCGACTT CCCCGGCGAG AAACTGCCAG GTGTCCTCAA GGCGCTGTCC
TACCTGATCG CGAACACCCG TCACCTGATG CAGTTGCCGG ACCCGACACT CCCCTATGTC
AGCCTGTCCG GCAAACAGGT TGTGGTGCTG GGTGGCGGCG ATACCGCCAT GGACTGTCTG
CGTACGGCCA TCCGCCAAGG TGCCCGCCAT GTGACCTGTG TCTACCGCCG CGACGAAGAG
AACATGCCCG GCTCACGCCG GGAAGTCGCC AACGCCCGCG AAGAAGGCGT CCACTTTCTT
TTCAATCGTC AGCCCGTCGA AGTGGTCGGA GATGCTGCAT CGGGAGCGCA GGGCGTGCGT
CTGGTGGAGA CCCGTCTGGG CGAGCCCGAT GCCAGGGGCC GGCGTCACCC GGAAATCATT
CCCGGCTCGG AACAGGTGCT GGATGCCGAT GTCGTGATCA TCGCCTTCGG CTTTGATCCC
TCCCCTGCTC CCTGGTTTGC GGAACAGCAC ATCACTACGG ACAGCCGGGG GCGGATCAGC
ACCAACGCGC AGTTCCAGAC TAGCAACCCG CGCATTTTTG CCGGCGGAGA CATGCGACGA
GGCTCCGACC TCGTGGTCAC TGCGGTGGAC GAAGGGCGCC GCGCGGCGCA GGGCATCCTC
GACTATCTGG GGGTATGA
|
|---|
| Protein sequence | MSHFSFIEDP RQDPKKLDVE ERREAFKEIY QSFDLGSAQL QADRCLHCGN PYCEWKCPVH
NYIPNWLQLI VENRLEEAAT LSHQTNTLPE ICGRICPQDR LCEGACTLND GFGAVTIGNL
ERFITEEALA RGWQPQMPDI PPNGKRVAVV GAGPAGLGCA DILNRAGTEV VVFDRYPAVG
GLLTFGIPSF KLEKAVVARR ANLLQEMGIR FQLDTEVGRD ISLGKLLDDF DAVFLGMGTY
TAKTGDFPGE KLPGVLKALS YLIANTRHLM QLPDPTLPYV SLSGKQVVVL GGGDTAMDCL
RTAIRQGARH VTCVYRRDEE NMPGSRREVA NAREEGVHFL FNRQPVEVVG DAASGAQGVR
LVETRLGEPD ARGRRHPEII PGSEQVLDAD VVIIAFGFDP SPAPWFAEQH ITTDSRGRIS
TNAQFQTSNP RIFAGGDMRR GSDLVVTAVD EGRRAAQGIL DYLGV
|
|---|
| |