Gene AFE_0658 details

Gene Information

• Locus tag: AFE_0658
• Symbol: rho
• ID: 7136825
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 588567
• End bp: 589823
• Gene Length: 1257 bp
• Protein Length: 418 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643529064
• Product: transcription termination factor Rho
• Protein accession: YP_002425146
• Protein GI: 218665961
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTGA CCGACCTCAA ACGCAAAACG GCCGCTGATC TGGCGGTGAT CTGCCAGGAC 
ATGGGGTTGG AGGGTACCGC CCGTCAGAAG AAACAGGAAA TCATTTTCAA TATCCTCAAG 
GCGCACGCGC GCAATGGCGA CGCCATTTAC GGTGAGGGGG TGCTGGAAAT TCTGCAGGAT 
GGATTTGGCT TTCTGCGTGC CGCTTCCGGG TCTTACATGG CGGGGCCGGA TGACATCTAT 
GTCTCGCCCT CACAGGTGCG GCGCTTTCAC CTGCAGACCG GAGACACGGT GTCCGGCCAG 
ATTCGCCCTC CCAAAGAAGG TGAACGCTAT TTCGCGCTGC TCAAGGTGGA GAGCATCAAT 
TTCGAAGCGC CGGAAGCAAC CCGCAACAAA GTCAATTTTG ACGATTTGAC GCCTTTGTTC 
CCGGACGAGC GTTTGCGCCT GGAATACGAC GCGGTACCTT ATGGCGAAAT GGCTCCGCGG 
ATCATCGATC TGGTATCACC CATCGGCAAG GGCCAGCGCG GTCTGATCGT CGCCCCGCCC 
AAAACCGGCA AGACGGTGTT GTTGCAGCAG ATTGCCCACG CCATTACCGC CAACCATCCG 
GAATGCTATC TGATCGTGCT GCTGATCGAC GAGCGTCCTG AAGAAGTGAC GGAGATGCAG 
CGCTCGGTGA AGGGCGAAGT GGTTTCTTCC ACCTTTGACG AACCGGCGAC GCGCCACACC 
CAGGTTGCGG AAATCGTCCT GGAAAAGGCC AAGCGCCTGG TGGAGCACAA GCACGATGTG 
GTCATCCTGC TCGACTCCAT CACCCGCCTG GCGCGCGCCT TCAACACCGT AGTGCCGTCT 
TCCGGCAAGG TGCTGACCGG CGGCGTGGAT GCCAATGCGC TGCAGAAGCC CAAGCGCTTC 
TTTGGCGCCG CACGCAACAT CGAAGAGGGC GGCAGCCTCA CCATCATCGC CACGGCGCTG 
GTGGAAACCG GTTCCAAGAT GGACGAAGTC ATCTTCGAAG AGTTCAAGGG TACGGGCAAT 
ATGGAAGTAC ATCTCGACCG TCGTCTAGCC GAGAAACGTA CTTACCCGGC CATCAATCTC 
AATAAATCCG GCACCCGTCG TGAAGAACTG CTGGTCCCGG CCGAGATGCT CAGCAAGATG 
TGGGTATTGC GCAAATTGCT CGCGCCCATG GATCCGGTGG AATCCATGGA GTTTCTGCTC 
GACAAGGTGC GCAGCACCAA AAATAACGCA GAGTTCTTTG ACTCCATGAA CCGTTAA 

 

Protein sequence

MNLTDLKRKT AADLAVICQD MGLEGTARQK KQEIIFNILK AHARNGDAIY GEGVLEILQD 
GFGFLRAASG SYMAGPDDIY VSPSQVRRFH LQTGDTVSGQ IRPPKEGERY FALLKVESIN 
FEAPEATRNK VNFDDLTPLF PDERLRLEYD AVPYGEMAPR IIDLVSPIGK GQRGLIVAPP 
KTGKTVLLQQ IAHAITANHP ECYLIVLLID ERPEEVTEMQ RSVKGEVVSS TFDEPATRHT 
QVAEIVLEKA KRLVEHKHDV VILLDSITRL ARAFNTVVPS SGKVLTGGVD ANALQKPKRF 
FGAARNIEEG GSLTIIATAL VETGSKMDEV IFEEFKGTGN MEVHLDRRLA EKRTYPAINL 
NKSGTRREEL LVPAEMLSKM WVLRKLLAPM DPVESMEFLL DKVRSTKNNA EFFDSMNR