| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0647 |
|---|
| Symbol | |
|---|
| ID | 7136818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 578323 |
|---|
| End bp | 578940 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643529052 |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative |
|---|
| Protein accession | YP_002425135 |
|---|
| Protein GI | 218666130 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATC GGCGACGGCA GGATCGGGTT TGTGTGGCGA TTAGCGGCGC TTCCGGTGCG
GCTTATGGGT TGCGGCTGGT GGAGGTGCTA CTGACCGCCG GGGTGCGGGT CTATCTGCTG
ATATCGGACG CAGCGCGGGT GGTTTGCCGT GAGGAGTTGA GTCTGGATCT CCCGGATACG
GCTGAGGCGG TGACCCGTTT CCTCAATGAA CGGTTCGGCG CCGACCCGGA CCTGTTATCG
GTTTATGCCC AGGATGACTG GCTATCTCCA GTGGCTTCCG GTTCCAATGC GGCTCAGGCC
ATGGTGGTCT GTCCCTGTTC CGGGGGGACA CTGGCCGCCA TTGCCCACGG GCTGTCCGAG
AATCTGATCG AGCGCGCCGC CGACGTGATG CTGAAAGAAG GCCTGAAACT CATTCTGGTG
CCTCGCGAAA GCCCCGTCTC GACGATTCAT CTGGAAAATA TGCTGAAGCT GGCACAGATG
GGGGTACGCA TTCTGCCGGC GAGCCCCGGT TTTTACCACC ACCCCCAAAG AATCGAAGAT
TTGGTGGATT TCATCGTGGC GCGGATTCTG GACCAACTGG GGTTGCCGAA CCGGATTGCG
CAGCGCTGGG GAGAGTAG
|
|---|
| Protein sequence | MEDRRRQDRV CVAISGASGA AYGLRLVEVL LTAGVRVYLL ISDAARVVCR EELSLDLPDT
AEAVTRFLNE RFGADPDLLS VYAQDDWLSP VASGSNAAQA MVVCPCSGGT LAAIAHGLSE
NLIERAADVM LKEGLKLILV PRESPVSTIH LENMLKLAQM GVRILPASPG FYHHPQRIED
LVDFIVARIL DQLGLPNRIA QRWGE
|
|---|
| |