Gene AFE_0628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0628 
SymbolpdxH 
ID7137055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand- 
Start bp559363 
End bp560019 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content63% 
IMG OID643529034 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_002425117 
Protein GI218667687 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGGCG AAATAGATCA CCGCAGTACC CGCCGAGACT ATGTGCACAG CGAACTGCAT 
CGCAAGGATC TGAATCCCGA TCCGTTTCAT CAGTTTTCCG ACTGGCTGGC GGCAGCGATC 
GCGGCACACA ACTTTGATGC GACAGCCATG GCACTGGCGA CAAGCGACGC GGAGGGGCAT 
CCTGACGTGC GAATCGTGCT TCTCAAGCAT TTTGATGAAA GCGGTCTGTG CTGGTACACC 
GATCAGCGCA GCCCCATGGG ACGGCAACTG GCGGCCAACC CGCAGGCAGC CGTAGTATTT 
TACTGGCCGG AAAATGACCG GCAGGTGCGG GTGGACGGCA CCGTCGAAAA ACTCAGCGAT 
GTCGAGGCGG ATGCCTATTT TCAGCAACGT CCCGAAGGCA GCCGCTTTGC CGCTGCCGCT 
TCCGAGCAGA GTCAGCCCAT CGCCAGTCGC GCTGCACTGG AGCAGCGCGT AGCGGCCTTA 
CGGGCCCGTT ATCCCGCCGG GGACGTCCCG CGCAACCCCG CCTGGGGCGG CTACCGTCTG 
CAGCCGGAAC ACTTCGAGTT CTGGCAGGGA CGCCGCAGCC GGTTGCACGA CCGTTTCCGT 
TACAGCCGCC CGGCCGACAC CGGCGGCGCG TGGGTGATTC AGCGGCTGAT GCCCTGA
 
Protein sequence
MEGEIDHRST RRDYVHSELH RKDLNPDPFH QFSDWLAAAI AAHNFDATAM ALATSDAEGH 
PDVRIVLLKH FDESGLCWYT DQRSPMGRQL AANPQAAVVF YWPENDRQVR VDGTVEKLSD 
VEADAYFQQR PEGSRFAAAA SEQSQPIASR AALEQRVAAL RARYPAGDVP RNPAWGGYRL 
QPEHFEFWQG RRSRLHDRFR YSRPADTGGA WVIQRLMP