Gene AFE_0470 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAFE_0470 
SymbolrpoS 
ID7136154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 23270 
KingdomBacteria 
Replicon accessionNC_011761 
Strand
Start bp410427 
End bp411380 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content62% 
IMG OID643528881 
ProductRNA polymerase sigma-38 factor 
Protein accessionYP_002424966 
Protein GI218666687 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAACG CGATTGGAGA CGAGGATGAG GACGGGGGGT TTCCCGACGC ACCCCCGATC 
TCGGAACAGG ACGAGGATGC TCCGGAAAAG ATCGATGGAG CGGAGGATTT CGGCGAGGCG
CCCGACTGGG ATGCCACCCG CTGTTATCTT CGGGAGATCG GACACCGTCC GCTGCTGACA
GCGGAGCAGG AAGTGACCCT GGGGCGCATG GTGCAGACTG GTGATCAGGC CGCGCGCTGC
ACCATGATAG AGAGCAATCT CCGCCTGGTA GTAAAGGTGG CGCGACACTA CCTCAACCGG
GGCTTGCCAC TTCTGGACCT GATCGAAGAG GGCAACCTCG GGCTGATCCG AGCGGTGGAG
AAATTTGATC CGGAGCGCGG CTTTCGCTTC TCTACCTATG CGACCTGGTG GATTCGTCAG
AATATCGAGC GGGCGCTGAT GAATCAGACC CGCACCATCC GTCTGCCCAT TCACGTGATG
AAGGAACTCA GCGCGGTGCT GCGCGCCACC CGCTGCCTCG CACAAACTCT GCAGCGGGAT
CCGACGCCGG AGGAGGTGGC AGAAGCTTTG GATCGCTCCG TCGACGCGGT TCGCGATTGC
CTGGAAATGG ATGGCCGGGT GACGAGCCTG GATATGCCCT ATGGCAAGGG GTCGGATCGT
TCCCTGGCCG ATCTGGTGGC AGACACTAAC GCGCCAGGCG TGGAGCAGCG GCTGGAGAAC
CAGAATCTTT CCCGGCAGGT GCACCAGTGG ATTGCGACCA TGACCGAAAA ACATCGCCTC
GTGCTGCTCT GGCGCTTCGG TCTGGACGGT ACGGACGGCG CGACGTTGGA AGAGGTGGGC
TCCCGCCTCG GCATCACCCG GGAGCGGGTG CGCCAGATTC AGGTGGAGGC GTTGCTGGTG
TTGCGCCATC GCATCGAAGC GGAAGGGTTG GCACCCGAGG GCCTGTTCGG CTGA
 
Protein sequence
MINAIGDEDE DGGFPDAPPI SEQDEDAPEK IDGAEDFGEA PDWDATRCYL REIGHRPLLT 
AEQEVTLGRM VQTGDQAARC TMIESNLRLV VKVARHYLNR GLPLLDLIEE GNLGLIRAVE
KFDPERGFRF STYATWWIRQ NIERALMNQT RTIRLPIHVM KELSAVLRAT RCLAQTLQRD
PTPEEVAEAL DRSVDAVRDC LEMDGRVTSL DMPYGKGSDR SLADLVADTN APGVEQRLEN
QNLSRQVHQW IATMTEKHRL VLLWRFGLDG TDGATLEEVG SRLGITRERV RQIQVEALLV
LRHRIEAEGL APEGLFG