Gene AFE_0438 details

Gene Information

• Locus tag: AFE_0438
• Symbol: def-1
• ID: 7135199
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 380030
• End bp: 380533
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643528849
• Product: polypeptide deformylase
• Protein accession: YP_002424934
• Protein GI: 218666795
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGTAC TTCCGATTCT GACTTATCCG GACTCCCGGC TTCAGCGCAA GGCCGATCCG 
GTCAGCGTAT TCGACGACGA TCTGCATCAC TTTATCGATG ATCTGACGGA GACCATGTAT 
GCCGGCCCAG GGGGAGTGGG TATTGCGGCG CCGCAGGTGG ACCGCGCGCA ACGTATCGTG 
ATCGTCGATG TGCGCCCTAA ACTGGGAGAC GACTGCCATG GGCTCATGGT GCTGATCAAT 
CCGGAACTGG CGGCGTGGGA GGGCATGGTG GTGGGCCGGG AAGGCTGCAT GTCGGTGCCG 
GATTTCACGG GCAATGTCAT TCGCGCGGAA CGCATACAGG TGCAGGCCCA GGATGTCCTG 
GGACGGGAGC GGAGTTACGA GTGCGAAGGC TTCGAGGCCA GAGCGGTCCA GCATGAAATG 
GATCATCTCG ACGGCCTTCT GTTTCTCGAC CGGCTGGTCT CACGGAAGGT CGATCTGTTC 
CGGCGCAAAA ATTACAGGAA GTAG 

 

Protein sequence

MAVLPILTYP DSRLQRKADP VSVFDDDLHH FIDDLTETMY AGPGGVGIAA PQVDRAQRIV 
IVDVRPKLGD DCHGLMVLIN PELAAWEGMV VGREGCMSVP DFTGNVIRAE RIQVQAQDVL 
GRERSYECEG FEARAVQHEM DHLDGLLFLD RLVSRKVDLF RRKNYRK