Gene AFE_0372 details

Gene Information

• Locus tag: AFE_0372
• Symbol: truD
• ID: 7135158
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 321370
• End bp: 322458
• Gene Length: 1089 bp
• Protein Length: 362 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643528784
• Product: tRNA pseudouridine synthase D
• Protein accession: YP_002424875
• Protein GI: 218667505
• COG category: [S] Function unknown
• COG ID: [COG0585] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR00094] tRNA pseudouridine synthase, TruD family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGAAA GTCTGCCGCG CATCTATCCC GCAGAGAGCG GTCTGCTTGG CGCCGAAATG 
AGGCAGTCTC CAGAAGACTT TCAGGTCACG GAACTGCTGC CTTTTGCCCC ATCCGGTTTG 
GGCGCCCATC ACTGGCTGGT AGTGGAGAAG CGCGGCCTCA ATACTCAGGA TGTGGCCAAT 
CGTCTGGCGC GTTGTGCCGG GGTGGCGGTC CGGGATGTGG GTTTTGCCGG TCTCAAGGAT 
CGTCAAGCCG TTACCCGGCA GAGTTTTACG GTGCCGGCCA CGGCGGGTAG CAACCCGGAT 
TGGGGCAGTC TGGAAGACGA CAGTCTGCAC CTTCTACAGG TCGGCCGCCA TGACCGTAAA 
TTGCGTCGGG GCGTGTTACG TGGCAACCAC TTTCAACTCA CCTTGCGCGC CACCACGGGA 
GCACACAGTC TCTGGGACGC CCGCCTGCAA ATTCTCCGGA AACGAGGATT CCCCAACTAT 
TTCGGTGCCC AGCGCTTCGG GCACCGAAAT TTGCAAGAGG CCGCGCGACT GTTATCCGGA 
CAGCCGATGC GAGTAGACCG CCATCGGCGC GGCCTGCTCT GGTCCGCGGC CCGCTCCGCC 
CTGTTCAATC TGGTCCTCGC CGAGCGGGTG CGGCAAGCCA ACTGGACGGA GATTCTGCCG 
GGTGAAGTCG TGCAACTGGC GGGCTCGCAC AGCATTTTTC TGGCGGAGGA CGATGATCTC 
GCGGATTTGC AGGCGCGCGC CACCGACTGG GACCTGCACC CCACCGGCCC TTTGCCGGGT 
CGTGGCGGGT TGGCGCCGAC CCTGGTTGCC GCCGCGCTGG AGACCTCGGC CCTGGGCGCG 
GGGCCCGTCA TCGCCGGTAC GACAGACGAT GGCCTCCATT GGGCACGTCG TCTTGCAGAA 
CAAGGGCTGG ATGCCGCGCG GCGCCCCTTG CGCGCGCGTC CGGAAAACCT CAGCGGTCGC 
TGGGAGGATG CACAGACTCT GATTCTGAGT TTTTTCCTCC CTGCGGGCGT ATTCGCGACG 
AGTTGTGTGG AAGGCCTTTT GGGGAGGGAA ATGGCGGAAG CGCAAAGCCT TGACCTTTGT 
GTTGACTAG 

 

Protein sequence

MSESLPRIYP AESGLLGAEM RQSPEDFQVT ELLPFAPSGL GAHHWLVVEK RGLNTQDVAN 
RLARCAGVAV RDVGFAGLKD RQAVTRQSFT VPATAGSNPD WGSLEDDSLH LLQVGRHDRK 
LRRGVLRGNH FQLTLRATTG AHSLWDARLQ ILRKRGFPNY FGAQRFGHRN LQEAARLLSG 
QPMRVDRHRR GLLWSAARSA LFNLVLAERV RQANWTEILP GEVVQLAGSH SIFLAEDDDL 
ADLQARATDW DLHPTGPLPG RGGLAPTLVA AALETSALGA GPVIAGTTDD GLHWARRLAE 
QGLDAARRPL RARPENLSGR WEDAQTLILS FFLPAGVFAT SCVEGLLGRE MAEAQSLDLC 
VD