Gene AFE_0354 details

Gene Information

• Locus tag: AFE_0354
• Symbol: rpoA
• ID: 7136880
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 305255
• End bp: 306274
• Gene Length: 1020 bp
• Protein Length: 339 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643528766
• Product: DNA-directed RNA polymerase subunit alpha
• Protein accession: YP_002424857
• Protein GI: 218666577
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGAGG TTGGAGAGCT GTTGCGCCCG CAGGGCGTTG ACGTGGAAGT GATTTCAGCA 
CGCCGTGCGC GTCTGGCCCT TGGGCCCTTG GAGCGTGGTT TTGGCCACAC TCTGGGTAGT 
GGGTTGCGCC GGGTGTTGTT GTCGTCTCTC AAAGGTGCGG CGGTTACCGA GGTGGAGATT 
GAAGGGGTGT TGCACGAGTA CTCCAGCATC GAGGGCGTGC AGGAAGACGT GGTGGATATC 
CTGCTCAACT TGAAGATGCT GGCGGTACGG GCGCACGGAC GCGGAGATGC GGTGGTGACA 
CTGCGCAAGC GTGGCCCCGG CCAAATGACC GGCGCCGATA TCGTATCGGA ACATGGTATC 
GAAGTGGCGA ATCCGGAGCA GGTAATCGCC ACGCTGACCC GCGATGTGGA ACTGGTACTC 
CGTTTGCGTA TTGACGAAGG ACGCGGCTAC GACGCGGCGG CTACGCGACG CCAGTCCCAT 
GAAAAGCGTA TCGGTGTGAT GGCTCTGGAT GCGAGTTTTA GTCCGGTGCT GCGGGTGAGC 
TATCTGGTGG AAAACGCCCG GGTAGAGCAA CGTACCGACC TGGATCGTCT AATACTGGAT 
GTCGAAACCA ATGGTGTGGT GGATCCGGTC TGGGCGGTGC AGGAGGCAGC CCGCATTTTT 
CGCAGCCAGC TCGGCGTGCT GGCAGGTGCG GAAACCCGGG AAATACCCGA GGCGTCGCAG 
GTGCAGGTCA GTCAGAGCCT TACGCCCCTG TTGATTCGTC CGGTCGATGA TCTGGAACTC 
ACGGTGCGGT CGGCGAACTG CTTGAAGGCC GAAGACATTT TTTATATCGG CGATCTGGTG 
CAGAAATCGG AGCAGGAACT TTTAAAGGCG CCTAATCTGG GACGCAAGTC GCTCAATGAG 
ATAAAGGAAG TTTTGGTGGC GCATGGCCTG ACGTTGGGGA TGCGACTCGA CAGCTGGCCG 
CCGGAAAACC TGCCGCCGGT GCCCGGGCGG GCGGCCGATA CGGACTCGAT CATCGGCTAA 

 

Protein sequence

MTEVGELLRP QGVDVEVISA RRARLALGPL ERGFGHTLGS GLRRVLLSSL KGAAVTEVEI 
EGVLHEYSSI EGVQEDVVDI LLNLKMLAVR AHGRGDAVVT LRKRGPGQMT GADIVSEHGI 
EVANPEQVIA TLTRDVELVL RLRIDEGRGY DAAATRRQSH EKRIGVMALD ASFSPVLRVS 
YLVENARVEQ RTDLDRLILD VETNGVVDPV WAVQEAARIF RSQLGVLAGA ETREIPEASQ 
VQVSQSLTPL LIRPVDDLEL TVRSANCLKA EDIFYIGDLV QKSEQELLKA PNLGRKSLNE 
IKEVLVAHGL TLGMRLDSWP PENLPPVPGR AADTDSIIG