| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0321 |
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| Symbol | rpoC |
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| ID | 7137209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 284102 |
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| End bp | 288256 |
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| Gene Length | 4155 bp |
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| Protein Length | 1384 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643528733 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_002424824 |
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| Protein GI | 218668112 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAGACT TACTGAAGCT CTTCAAACAA AACGATCAGC AGGAAGAATT CGATGCGATT
CGGATCGGTA TCGCGTCTCC GGATAAGGTG CGGTCATGGT CTTTCGGTGA GGTAAAAAAG
CCCGAGACGA TTAATTACCG GACCTTCAAA CCGGAACGCG AAGGTTTGTT CTGTGCCAAG
ATCTTTGGAC CGATCAAAGA CTACGAGTGC CTCTGCGGCA AGTACAAGCG CCTGAAACAC
CGCGGTGTGG TCTGCGAAAA ATGCGGTGTT GAGGTAACCC AGGCGAGGGT CCGCCGCGAG
CGGATGGGAC ACATTGAACT CGCCAGTCCT GTCGCCCACA TCTGGTTCCT CAAATCTCTG
CCGAGTCGTA TGGGCATGAT TCTCGATATG CCCCTGCGTG ATATCGAGCG GGTCCTCTAT
TTCGAAGCGT ATGTGGTCGT TGATCCGGGG GTGACCGCGC TGGAACGCGG GAACATCCTT
ACCGAAGACC AGTACCTGGA CGCCCTGGAA GAGCATGGGG ATGAGTTTGC AGCAAAAATG
GGCGCAGAGG GTATTCGTGA CCTGCTGCGT GGCATACCCC TGACTCAGGA AATTGAGCAG
ATCCGTAATG AACTGCGGGA GAGCAATTCC GACACGAAGA CCAAGAAGCT CAGCAAGCGG
TTGAAGATCC TGGAGGCCTT TGAACAGTCG GGCAATCGTC CTGAATGGAT GATCATGGAA
GTTCTTCCGG TGCTGCCCCC GGACCTGCGC CCCCTGGTGC CACTGGATGG CGGCCGTTTT
GCAACCTCTG ATCTCAACGA TCTCTACCGG CGGGTCATCA ATCGCAACAA CCGGCTCAAG
CGCCTGCTGG AACTAAAGGC GCCGGACATC ATCGTGCGCA ACGAAAAACG CATGTTGCAG
GAAGCCGTGG ACGCGCTGCT CGATAACGGT CGGCGCGGAC GTGCCATATC GGGACCCAAC
AAACGCCCAC TCAAGTCACT TGCGGATATG ATCAAGGGCA AGCAGGGCCG CTTCCGTCAG
AATCTGCTGG GTAAGCGGGT GGACTACTCC GGCCGCTCGG TGATCGTCGT CGGACCTGAG
CTGCGCCTGC ACCAGTGCGG TTTGCCGAAG AAGATGGCCC TGGAGTTGTT CAAGCCATTC
ATTTTCAACA AGTTGGAAGA GCGTGGGCTG GCGACCACCA TCAAGGCCGC CAAGCGTTTG
GTCGAGCAGG AAAAACCGGA AGTCTGGGAT ATCCTTGAAG AGGTGATTCG CGAACATCCG
GTCATGCTGA ACCGCGCGCC AACCTTGCAT CGTCTGGGTA TCCAGGCCTT TGAACCGGTC
CTGATCGAAG GCAAGGCCAT CCAACTGCAT CCACTGGTAT GTGCTGCATA CAATGCGGAT
TTTGATGGCG ATCAGATGGC TGTGCACGTC CCGCTGTCGC TGGAGGCGCA GTTGGAAGCC
CGGACCCTGA TGATGTCCAC CAACAATATT CTCAGCCCGG CCAATGGTGA GCCCGTTATC
GTCCCGTCCC AGGACATCGT CCTCGGACTC TACTACGTCA GCCAGGAGCG GGCCGACGCC
AAGGGCACCG GCGGAGTCTT CGCGGATGCG GCAGAGGTGC GGCGCGCTTA TGAAACGGGC
AACCTGGGTC TTCACGCCCG TATCACCGTG CGCTTTCGCG GTGAGCGTAT CGATACCACG
GCAGGACGCG CCCTGCTCGG GGATATTCTC CCTGAGGGCC TTCCGTTCAG TGTCATCAAC
CGGGTGCTGA AGAAAAAGGT GATCGGCGAA CTCATCAATA CCTGTTACCG GCGTTTGGGT
ATCAAGGATA CGGTTATCTT TGCGGATCAG TTGATGTATA CCGGCTTCCG TATGGCGACA
CGCGCAGGCA TTTCCTTCGG TGCTGGGGAT ATGGTCACGC CGCTGGAAAA AGAGGGCATT
CTGGCTCGGT CCGAAGATGA GGTCAAAGCC ATTCAGGCCC AATACACCTC GGGTCTGGTG
ACTGAGGGTG AACGCTATAA CAAGGTCGTC GACATCTGGT CGCGGGCTAC CGATGAAGTT
GCCAAAGCCA TGATGGATCG GGTCAGTAAG GATACCGTGT ACCTCCCGGA CGGCAGCTCG
GTGCAGCAGG ATTCGTTCAA CTCGATCTTT ATGATGGCGG ATTCCGGCGC CCGAGGTTCG
GCGGCGCAGA TTCGCCAGCT TGCAGGTATG CGCGGCCTGA TGGCGAAGCC CGACGGTTCT
ATTATCGAGA CTCCCATCAC CGCAAATTTC CGCGAGGGAC TCAACGTCCT GCAATACTTC
ATTTCCACTC ACGGTGCCCG CAAGGGGCTT GCAGATACCG CGCTGAAAAC CGCCAACTCC
GGCTATTTGA CCCGGCGTCT GGTAGACGTT ACCCAGGATC TGGTGGTGGT CGAGACCGAT
TGCGGATCGG AGGAAGGCCT TCCCATGACC TCCCTCGTCG AGGGCGGTGA GATCATCGAA
CCTCTGCGCG ACCGCGTGCT GGGTCGTGTA GTTGCGGAGG ATGTGGTCCA CCCCAACACC
GGTGAGATTG TCATCCCCCG CAATACCCTG CTGACAGAGC GGCATCTCAG TCAGTTGGAC
GAGCTGGGTG TGGATGCACT GAAGGTACGT TCGCCCCTGA CCTGCCGGTC ACGCCATGGG
GTCTGTGCAC TGTGTTATGG GCGTGACCTG GCACGTGGGC ATCTAGTCAA TGCGGGTGAG
GCAGTCGGCG TTATCGCTGC GCAATCCATT GGTGAACCGG GCACCCAGCT CACCATGCGT
ACTTTCCACA TCGGTGGTGC GGCCAGTCGT TCTGCTGCGC AAAGCAGTAT CGATATCAAG
CAGGGCGGGG TTTTTCGTTA TCAGCCCAAC CTTCGCCTGG TCACGCACTC CAGCGGACGC
CACGTAGTGG TGGGCCGGAA TGGGGAAGTT ACCGTCACTG ACGAACAAGG CCGGGAAAAA
GAGCGTTACA AGGTGCCCTA TGGTGCCACC ATTCTGGTGG ATGACAACGC CGCGGTCACA
GCGGGTCGTC GGGTCGCGGA ATGGGATCCG CATACGCGGC CCATTGTCAG TGAGGTCGGT
GGCAAAATTT CTCTGAAAGA TGCGGTGGAA GGCGCGAGCG TAGCCATCCA GACCGACGAG
ATCACCGGGC TGTCGACACT TGTCGTCATC GACGCGAAGC AACGGCCACC CCAGGGGCGC
GATTTGCGGC CGGTGATCAG TCTGCTGGAC GAGCATGGCC AGGACCTGAA GCTGCCCGGT
ACTGACCTGC CCGCACGTTA TTTCCTGCCG GCAAAGGCGA TTATCGCGGT GCACGAAGGT
ATGGAGATTC ATCCCGGAGA CATTCTGGCA CGTCTGCCGG TGGGTACCAC AAAGACGCGC
GACATTACCG GTGGTCTGCC CCGTGTGGCG GAACTGTTCG AGGCCCGGCG TCCCAAGGAC
TTCGCTGTTA TCGCGGAGCA TGAGGGCATC ATCGGCTTCG GGAAAGACAC CAAGGGCAAG
CAGCGACTGA TCATCACCGA CGAGAGCGGG GAACAGCATG AATATCTGAT TCCCAAGGGT
CGCCATGTGA CCGTGTACGA AGGGGAGCGG GTCAGCCCGG GTGAGCAGCT TGTCGAGGGC
CAGCCGGTTC CGCACGATAT CCTGCGTGTG TTGGGTGTGC AGGCTCTCGC CAACTACATT
GTCGATGAGG TGCAGGACGT ATACCGTCTG CAGGGCGTGC GTATCAATGA TAAGCACATC
GAAGTCATTC TGCGCCAGAT GCTGCGTAGG GTCGAAGTGA CGTCCAGTGG GGACAGTACC
TTCATTCCCG GAGACCAGGT GGATCGGGCA CGGGTGGAAG ATGAAAACAT CGCGCTGGAA
GCTGCCGGCA AAGAACTGCC GCGTTTCACG CCGATGTTGC TGGGCATCAC CAAGGCAAGC
CTGTCTACCG AATCTTTCAT CTCGGCCGCA AGTTTCCAGG AAACCACCCG CGTACTCACT
GAGGCTGCGG TATCCGGCAA GGTAGACGAC TTGCGCGGCC TCAAGGAAAA CGTCATCGTC
GGACGTTTGA TTCCGGCGGG AACGGGCCTG GCCTACCATG AGCATCGCCG ACGGCTGAAC
CGGGGTGAAC CTGTCCTTTC CTTGGAGACT GCGGTGCCGC GGGATATGCC GGTATCGGTA
AGCGATACGC CGTAA
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| Protein sequence | MKDLLKLFKQ NDQQEEFDAI RIGIASPDKV RSWSFGEVKK PETINYRTFK PEREGLFCAK
IFGPIKDYEC LCGKYKRLKH RGVVCEKCGV EVTQARVRRE RMGHIELASP VAHIWFLKSL
PSRMGMILDM PLRDIERVLY FEAYVVVDPG VTALERGNIL TEDQYLDALE EHGDEFAAKM
GAEGIRDLLR GIPLTQEIEQ IRNELRESNS DTKTKKLSKR LKILEAFEQS GNRPEWMIME
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELKAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAISGPN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPE
LRLHQCGLPK KMALELFKPF IFNKLEERGL ATTIKAAKRL VEQEKPEVWD ILEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLSLEAQLEA
RTLMMSTNNI LSPANGEPVI VPSQDIVLGL YYVSQERADA KGTGGVFADA AEVRRAYETG
NLGLHARITV RFRGERIDTT AGRALLGDIL PEGLPFSVIN RVLKKKVIGE LINTCYRRLG
IKDTVIFADQ LMYTGFRMAT RAGISFGAGD MVTPLEKEGI LARSEDEVKA IQAQYTSGLV
TEGERYNKVV DIWSRATDEV AKAMMDRVSK DTVYLPDGSS VQQDSFNSIF MMADSGARGS
AAQIRQLAGM RGLMAKPDGS IIETPITANF REGLNVLQYF ISTHGARKGL ADTALKTANS
GYLTRRLVDV TQDLVVVETD CGSEEGLPMT SLVEGGEIIE PLRDRVLGRV VAEDVVHPNT
GEIVIPRNTL LTERHLSQLD ELGVDALKVR SPLTCRSRHG VCALCYGRDL ARGHLVNAGE
AVGVIAAQSI GEPGTQLTMR TFHIGGAASR SAAQSSIDIK QGGVFRYQPN LRLVTHSSGR
HVVVGRNGEV TVTDEQGREK ERYKVPYGAT ILVDDNAAVT AGRRVAEWDP HTRPIVSEVG
GKISLKDAVE GASVAIQTDE ITGLSTLVVI DAKQRPPQGR DLRPVISLLD EHGQDLKLPG
TDLPARYFLP AKAIIAVHEG MEIHPGDILA RLPVGTTKTR DITGGLPRVA ELFEARRPKD
FAVIAEHEGI IGFGKDTKGK QRLIITDESG EQHEYLIPKG RHVTVYEGER VSPGEQLVEG
QPVPHDILRV LGVQALANYI VDEVQDVYRL QGVRINDKHI EVILRQMLRR VEVTSSGDST
FIPGDQVDRA RVEDENIALE AAGKELPRFT PMLLGITKAS LSTESFISAA SFQETTRVLT
EAAVSGKVDD LRGLKENVIV GRLIPAGTGL AYHEHRRRLN RGEPVLSLET AVPRDMPVSV
SDTP
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