Gene AFE_0297 details

Gene Information

• Locus tag: AFE_0297
• Symbol: ribD
• ID: 7134794
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 266991
• End bp: 268091
• Gene Length: 1101 bp
• Protein Length: 366 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 643528709
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_002424804
• Protein GI: 218668008
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCGACTG AGCAGGATCT TGCCTTCATG AGTGAGGCTC TGGTGCTTGC GGAACAGGGC 
CTGTACAGCG CGCACCCCAA TCCCTGTGTT GGGGCTGTTC TGGTGAAAGA TGGACGCGTC 
ATCGGGCGGG GTGCTCATCT GCAAGCCGGT GAGCCGCATG CGGAGGTTCT CGCGCTGAAG 
GAGGCGGGTG CTGCTGCGCG CGGCGCTACG GCTTATGTGA CTCTGGAGCC TTGCAGTCAC 
TATGGCCGTA CGCCGCCCTG TGCAGATGCG CTGATTGCCG CGGGTATCGC GCGGGTGGTG 
ATTGCCATGC GCGACCCCAA CCCTCTGGTG GCGGGGCGCG GCGTGGAACG TCTGCGCGCC 
GCCGGCGTGG TGGCCGAGGA GGGTTGCCTG GAAGCGGCGG CAGAAGCCTT GAATCCTGGA 
TTTCTGCGAC GGATGCGCCA CGGCCGCCCC TGGCTGCGGC TCAAGCAGGC CATGAGTCTG 
GATGGCCGGG TGGCGCTCGC CAACGGGCGA AGCCAATGGC TGACGGGGGA GGCGGCGCGT 
GCGGATGTGC AGCAGGAGCG GGCGCGCGCC AGTGCCATCC TTGTCGGCAT CGGCACGGTG 
CTGGCCGATA ATCCGCGCCT CGCACCACGC CTGGAAGCTC CCCTGCGGCG CTATCCGGTG 
AAAGTCATCA TGGACAGCCA TCTGCGCACG CCGCCGGATG CGGCGCTTTT TGGTACACCT 
GGTGCGGTAT GGATTTTTCA TGGGCAGGAT GCTCCTGTTG CCGCCCGGGC GGCGCTATGC 
GCTGCCGGTG CGGAGTTGCT GTTCTGTCGC GGCACGGTAC AGGGACTGGA CTGGCAGGAA 
GTGATGGGCA TGCTGGCAGA GCGGCAGATC AACGAGGTGC TGGTCGAAGC GGGGCCTGGC 
GTCGCTGCTT CCCTGTTCGC CGCTGGCCTG ATCGACGAAT GGCTGCTTTA TGTGGCCCCG 
CTGCTGCTCG GGCTGGATGC ACGGCCAGTG CTCGCCACCG GCCCCTATTC GGATCTCGCG 
GAGGTGCCGC GCTGGTCGGT GATCCAAAGC TCCCGATTGG GCAACGATAT CAAGTGGACA 
TTGCGTCCAC AGGAGCGATA G 

 

Protein sequence

MATEQDLAFM SEALVLAEQG LYSAHPNPCV GAVLVKDGRV IGRGAHLQAG EPHAEVLALK 
EAGAAARGAT AYVTLEPCSH YGRTPPCADA LIAAGIARVV IAMRDPNPLV AGRGVERLRA 
AGVVAEEGCL EAAAEALNPG FLRRMRHGRP WLRLKQAMSL DGRVALANGR SQWLTGEAAR 
ADVQQERARA SAILVGIGTV LADNPRLAPR LEAPLRRYPV KVIMDSHLRT PPDAALFGTP 
GAVWIFHGQD APVAARAALC AAGAELLFCR GTVQGLDWQE VMGMLAERQI NEVLVEAGPG 
VAASLFAAGL IDEWLLYVAP LLLGLDARPV LATGPYSDLA EVPRWSVIQS SRLGNDIKWT 
LRPQER