| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0295 |
|---|
| Symbol | glyA |
|---|
| ID | 7136603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | + |
|---|
| Start bp | 265259 |
|---|
| End bp | 266503 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643528707 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_002424802 |
|---|
| Protein GI | 218666113 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCCA AAACCCTGAC CATCGCTGAT TTTGACCCCG TGCTTTGGGA TGCCATGCGC
AAAGAGGCCC GGCGCCAGGA GGATCATGTC GAGCTCATCG CTTCCGAGAA CTATGCCAGC
CCCATGGTAA TGGCGGCGCA GGGCTCGGTG CTGACCAACA AATACGCAGA AGGCTATCCT
GGTAAACGCT ACTATGGCGG CTGCGAGTAC GTAGATATCG CCGAGCAGCT CGCCATGGAC
CGTGCGCTGG AGCTTTTCGG CGCTGAACAT GCCAATGTCC AGGCTCATTC CGGCTCGCAG
GCCAATCAGG CTGTTTACTT GTCCGTGCTC CAGCCCGGTG ACAAGATCAT GGGCATGAGT
CTTGCCCATG GCGGCCACCT GACCCATGGC GCCAAAGTGA ACGTGTCCGG CAAGCTTTTT
CAGGTGGCGG CTTACGGCGT GCGCGCGGAA GACGGCCGCA TCGATTATGA CGCCATGGCG
GAGCAGGCGG AGCGGGAACG CCCGAAGATG ATCGTTGCCG GTGCCAGTGC CTACTCTCGC
GTCATCGACT TCGCCCGCAT CGGCGAGATT GCCCGCAGCA TCGGCGCCTA TCTGCTGGTG
GACATGGCGC ACATCGCCGG CCTTGTGGCC ACGGGCCTGC ATCCCAGCCC CGTGCCCCAT
GCGGATTTTG TCACCACCAC CACCCACAAG ACCCTGCGCG GTCCTCGCGG CGGATTGATC
CTCTGTCGGG AGCAATATGC CAAAAAGGTG AACTCCCTGA TCTTCCCCGG CTTACAGGGG
GGGCCGCTGA TGCATGTCAT CGCTGCCAAG GCCGTCGCCT TCCGTGAAGC GCTGCAGCCG
GAGTTCAAGT CCTATCAGCA GCAGGTCATT CATAACGCGC AAACCTTGAG CAAGGTGTTG
GCCGGGCGTG GTTATGGCGC GGTTTCGGGT GGCACCGACA ACCATCTCTT CTTGCTGAAC
CTGGGCGAAA AAGTCACGGG TAAGGAGGCG GAAGAGGCAC TGGGACAGGC CAATATCACC
GTCAACAAGA ATGCCGTGCC CTTCGATATC CGCCCCCCGG CGGTTACCAG CGGCATCCGG
ATTGGTACGC CGGCCGCTAC CACGCGTGGC TTTGGCGAGG CCGAAATGCA TCGCCTGGGC
AACGGCATTG CTGATGTCCT GGATGCGAGC AGCGATGCTG CGGTCATTGA GCGGGTCCGT
GCAGATATGA AGGCCCTCTG CCATCAGTTT CCGGTATACG GCTGA
|
|---|
| Protein sequence | MFSKTLTIAD FDPVLWDAMR KEARRQEDHV ELIASENYAS PMVMAAQGSV LTNKYAEGYP
GKRYYGGCEY VDIAEQLAMD RALELFGAEH ANVQAHSGSQ ANQAVYLSVL QPGDKIMGMS
LAHGGHLTHG AKVNVSGKLF QVAAYGVRAE DGRIDYDAMA EQAERERPKM IVAGASAYSR
VIDFARIGEI ARSIGAYLLV DMAHIAGLVA TGLHPSPVPH ADFVTTTTHK TLRGPRGGLI
LCREQYAKKV NSLIFPGLQG GPLMHVIAAK AVAFREALQP EFKSYQQQVI HNAQTLSKVL
AGRGYGAVSG GTDNHLFLLN LGEKVTGKEA EEALGQANIT VNKNAVPFDI RPPAVTSGIR
IGTPAATTRG FGEAEMHRLG NGIADVLDAS SDAAVIERVR ADMKALCHQF PVYG
|
|---|
| |