Gene AFE_0265 details

Gene Information

• Locus tag: AFE_0265
• Symbol: pilT-1
• ID: 7136488
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 238951
• End bp: 240081
• Gene Length: 1131 bp
• Protein Length: 376 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643528677
• Product: twitching motility protein PilT
• Protein accession: YP_002424772
• Protein GI: 218666306
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG5008] Tfp pilus assembly protein, ATPase PilU
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGTGC TGGATGACCT GCTGGTCCTG ATGGTGGAAA AAAACGGCTC GGATCTGTAC 
CTCACCGTGG GCTCGCCACC GGTCATGAAA GTCGACGGAC GGACGGTTCC GCTGGGGACA 
GAAATGCTGA AACCGGGTCA GGTGCTGAAT CTGGCCAAGG AAATTCTGGG GATGGAGCGC 
TTGCAGGAGT TCCAGCACGA GAAAGAAATC AACATGGCCA TTTCCGTGCC CGGGGTGGGG 
CGTTTCCGGG TCAACGGGTT TTTCCAGCGT GGTGAACTGA GCTTTGTCCT GCGCGCCATC 
AAGACCCAGA TTCCCAGCCT GGAGCAGCTC AGGCTGCCGC CGATACTGAA AGATCTGGCC 
ATGACGTCGC GGGGGCTGGT GCTCTTCGTC GGTTCTACCG GTTCCGGGAA AAGCACCTCT 
CTGGCGTCGA TGGTCCAGTA TCGCAACCAG AACGCGGCGG GTCATATCCT CACCATCGAG 
GATCCGATCG AATTTCTGCA CCGGAATGCG AAGTCCATCG TCAATCAGCG CGAAGTGGGC 
ATCGATACCC TGAATTATGA GCGGGCGTTG GAGAATGCAT TGCGGGAAGC ACCGGATGTC 
ATCCTGATCG GCGAAGTGCG CAGCCGGGAC ACCATGGATC ATGCCATCGC TTATGCCGAA 
ACTGGGCACC TGTGTATGTC CACCCTCCAT GCGAACAATG CCAATCAGGC CATTGAACGG 
ATCATCAATT TTTTCCCGGA AGACCGTAAA AAACAGTTGC TGATGGACCT TTCGCTCAAT 
TTGCGCGCCG TGGTCTCACA GCGCCTGTTG CCGGTCAAGG GGCAGAGCGG ACGAATCGCT 
GCAATGGAGG TGCTGATCAA CACTCCGGCC ATTGCCGATC TGATCTACAA GGGTGAAGTG 
GGCCTGCTGA AGGACGCCAT GTCGCGAACG AACGACGTCG GTATGCAGAC GTTTGATCAG 
AGCCTGTTGC AGTTGTTTAT GGATGGACTG GTGGAATATG ACGATGCCCT GCGCGCGGCC 
GATTCGCAGA ACGATCTGCG CCTCGCCATC AAACAGGCGT GTATGCGTTC GGGCATGGCA 
GATCCCGGGG CCGCCACCTC TGCGGAAGGG CAGTGGCGTA TTCAGTCTTG A 

 

Protein sequence

MSVLDDLLVL MVEKNGSDLY LTVGSPPVMK VDGRTVPLGT EMLKPGQVLN LAKEILGMER 
LQEFQHEKEI NMAISVPGVG RFRVNGFFQR GELSFVLRAI KTQIPSLEQL RLPPILKDLA 
MTSRGLVLFV GSTGSGKSTS LASMVQYRNQ NAAGHILTIE DPIEFLHRNA KSIVNQREVG 
IDTLNYERAL ENALREAPDV ILIGEVRSRD TMDHAIAYAE TGHLCMSTLH ANNANQAIER 
IINFFPEDRK KQLLMDLSLN LRAVVSQRLL PVKGQSGRIA AMEVLINTPA IADLIYKGEV 
GLLKDAMSRT NDVGMQTFDQ SLLQLFMDGL VEYDDALRAA DSQNDLRLAI KQACMRSGMA 
DPGAATSAEG QWRIQS