| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0108 |
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| Symbol | |
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| ID | 7136271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | + |
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| Start bp | 100177 |
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| End bp | 101736 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643528523 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002424619 |
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| Protein GI | 218666470 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACG CCAGGTATCC GCATGGCCAC AGGCGGCAGA AGGCGGGGCG ATCCGCCCCG
GGCATGGCCC GGCTGGGCGT CTTGCTCGGG ATTGTCGCTG CGGCCGGCTG CGCGGTGGGG
CCGCAGCCTG GTGCGCCCAA TGTGCGGGCG CCTGCGGCCT ATAACGCCCA TCCCCTGGAC
TTGCATGGCG GGCCGCAGCG GATTCGGTGG ACGCAGCAGG AATCTCAGGC CTGGTGGTCG
CTCTTTCATT CGTCCGCCCT GAACGGCTAC ATCCGGCAGG CCATGGAGGC CAACCCGGAT
ATACAGGCGG CGCGGGCAGC CCTGGCGCGT GAGCAGTCCT TGATCGCGGT GGCCCAGGGC
GGACTGCTGC CCAGTGTCGG TGCCGGTGCC GGAATCAGTC GTGGACGGGC ACAACGCACC
GGCGCGAATG GCGGGGCAAG CTACCGCATT CCCGGCAACC TCTATAGCCT GCTGCTGGGC
ACCATAAACG TCAGCTACAA CCCCGACGTG TTTGGTCGCC AGAAGGATCT GGTACATGCG
GCCAGGGCCC GGGCTGCGAT CAGTCGTGCC AGTCTGCATC AAAGTGAAGT CTTTCTGGCG
GCGGCCGTGA GCCGGGCGGT AATCAACGGT GCTGCGGCGC GGGCTCAGCT CGACGCCGCC
CGGCAGATCG CCACTGCCGA TGCCCGTCTG TTGCGCCTGC TGCAGCAGGA ATATCAGTTG
GGTTATCAGA ATCTGCAAAG TGTGGATCAA CAGGAGGCCA TCACCGCAGC CGCGCAGGCG
CGCATTGCCC CCTTGCAGGC CGATGTGGCG GTGGCCCGCC ACGGGCTGGC GGCTTTGCTG
GGCCAGTCCC CCGATACGGA TCTGCCCATG CCGACACTCG CCAGTCTGCA ATTGCCGTCC
AGCCTGCCCA CCACCCTGCC TTCGGCTCTG GCCGCGCAGC GCCCGGATAT CCAGGCCGCA
GCGGCGGAGC TGAAGGTGGC TGCGGCGCAG GCCGATGTGG CCACCGCCGA TCTGTATCCC
CAGTTCAATA TCACCGCCGA CATCGGTAAG GCGGCCATGA CCGGGGGGAT GTTCTTCAAC
CCGATTTCGA CCCTCTGGTC CCTGGGGGCG GGGATCGCGG CGCCGATTTA TAACGGTGGC
GCCCTCCATG CCCAACGTCG TGCGGCGCTT GACCAGTACA AAGCGGTCAG CGACCAGTAT
CGCGGCACCG TACTCGACGC CTTTCGTGAA GTGGCCGATG CCCTGCGTGC TTTGCAGGGC
GCCGACACGT CCTATCAACA TCGTCTGGCC GCACAGACTG CCGCCGGGGC CGCCCTGCGT
CTGGCGGAAG CCCGCTACCG TGACGGCGCC ACCGACTATG CCACGGTGCT CGATGCCGAA
ATCGCATATC AACAGGACAC GGTCGCTGCC ATCAGCGCAC GTGGTCAGCG TTATCTGGAC
AGCGTGGCGC TCTTTGTGGC GCTGGGCGAC GGCTGGCAGC CCGAAGCCGG TGATGCCCGC
ACGGCCAGCG ACGCGCAACC CCATTCCGCC ATTCACCAAT CTCCGGGAGC CCCTGCATGA
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| Protein sequence | MKNARYPHGH RRQKAGRSAP GMARLGVLLG IVAAAGCAVG PQPGAPNVRA PAAYNAHPLD
LHGGPQRIRW TQQESQAWWS LFHSSALNGY IRQAMEANPD IQAARAALAR EQSLIAVAQG
GLLPSVGAGA GISRGRAQRT GANGGASYRI PGNLYSLLLG TINVSYNPDV FGRQKDLVHA
ARARAAISRA SLHQSEVFLA AAVSRAVING AAARAQLDAA RQIATADARL LRLLQQEYQL
GYQNLQSVDQ QEAITAAAQA RIAPLQADVA VARHGLAALL GQSPDTDLPM PTLASLQLPS
SLPTTLPSAL AAQRPDIQAA AAELKVAAAQ ADVATADLYP QFNITADIGK AAMTGGMFFN
PISTLWSLGA GIAAPIYNGG ALHAQRRAAL DQYKAVSDQY RGTVLDAFRE VADALRALQG
ADTSYQHRLA AQTAAGAALR LAEARYRDGA TDYATVLDAE IAYQQDTVAA ISARGQRYLD
SVALFVALGD GWQPEAGDAR TASDAQPHSA IHQSPGAPA
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