Gene AFE_0019 details

Gene Information

• Locus tag: AFE_0019
• Symbol: def-2
• ID: 7134361
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: +
• Start bp: 20852
• End bp: 21355
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643528436
• Product: polypeptide deformylase
• Protein accession: YP_002424533
• Protein GI: 218667290
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCTTT TGAAGATACT GGAGATTCCT GACGCACGCC TCAAGGACGT GGCTCGACCC 
ATAGCCAGGG TGGACAAACA GATTCAGCAG CTTGCCGACG ATATGGCGGA GACCATGTAT 
GATGCCCCGG GTATCGGTCT CGCCGCGCCA CAGGTGGCCG CTGGCCACCG GCTGATTGTC 
GTGGATGTTT CGGAAAATCG CAACGATCTG CTGACCCTGC TGAATCCGGA AATCATCGCG 
CGCACCGGTG AGGAGGAGAT GAAGGAGGGT TGTCTGTCGG TGCCAGGGGT GCTGGAAACG 
GTGCGCCGCG CCGAAAAGGT GACGGTACGC GCCACCACGG TACAGGGCAA AACCGTTGAA 
TTGGAGGCCG ACGGTCTGCT GGCGGTTTGC CTGCAGCACG AGATCGACCA TCTCGACGGC 
ACGCTTTTTA TCGACCATCT GTCCCGCCTC AAGCAAAGTC TGATTCGCCG TAAGGCGGAA 
AAAAGGGTGC GGCTCGGTGA CTGA 

 

Protein sequence

MPLLKILEIP DARLKDVARP IARVDKQIQQ LADDMAETMY DAPGIGLAAP QVAAGHRLIV 
VDVSENRNDL LTLLNPEIIA RTGEEEMKEG CLSVPGVLET VRRAEKVTVR ATTVQGKTVE 
LEADGLLAVC LQHEIDHLDG TLFIDHLSRL KQSLIRRKAE KRVRLGD