Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | AFE_0018 |
Symbol | |
ID | 7135342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
Kingdom | Bacteria |
Replicon accession | NC_011761 |
Strand | - |
Start bp | 19720 |
End bp | 20769 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643528435 |
Product | LysM domain protein |
Protein accession | YP_002424532 |
Protein GI | 218666415 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAAGA ACATCTGGCG CAACACCCTA TTTTGTCTCG GCCTCTGCGC CATGGCCCCG GTAATGGCGC AGGCGGCGCC GTCCGGCACA CTGTTGCGCA CTGCGCACAG CTACACCGTC AAACGTGGAG ATACCCTCTG GGGTATTGCC GCACATTTTC TCAAAAACCC TTGGGAATGG CCGCGGCTAT GGCACCGGAA TACCTACATC AAAAACCCCA ACCTGATCTA TCCGGGCGAC CGCGTCGTGA TCACCCGCGG GCCGGGCGGC CAGCCGGAAC TCCGTGTGAT CGCGCTGCAT CCTCAAATGA CCGCGGAGCC CCTGCCCACG GTCGCACGCG GCGAGGTCAT GCCTTTTCTC GGCAACCCCG GTGTCATCGC CAGCAAGAAG GCTTACGACC AACTGCCTTA TCTTGCCGCC AGCGCCAGTG AGCATATCGT CTACGCGGTC GGCGACAAAC TCTATGCCTC CGGTCTGGCA CATGCGCCCG TTGGTGCCCA TTACCAGATT GTCGCCCTCG GGCCGGAGCT CTATCGTCCC GGCCGCAAAA ATGCCGTCGG TTATGCACTC CGCGATCTGG GCAGCGCCGT CGTGCGTCGC AATGGCGCCC ACGCCGCCAT GGAAATCACC AACGCCCTGA AGGAAATCTC GCTGGGCGAC CGGCTGATAC CCGCCACGAA GAGCGTTGTA CCCCACTACT TCCCCAGCGC CCCCTCCCAC CCGGTGAAGG CTCACATCAT CGCCAAGATG AGTGATTATC CCGAAATCAT GGTGGGTCAG GTGGTTATCG TGGACCAGGG CCGGGAAGAC GGTCTACGCG ACGGCAACGT ACTACAGATT GAAAGAGCCG CGGAAACGAC GAAAAATGCC GTGACCGGCA AAACCTTCGC CCTGCCACCC CAGAAGGTGG GCAGTGTGAT GCTGTTCCGG GTCTTTCCCA CCGTCTCCTA CGCGGTGATT ACCACGGCGA CGCGTGGCAT CCAGGTAGGT GACCATCTGG CCAGTCCGAG TCCCGTAACG GCCAGCGACA GCTCCGCAGG GAACGGGTGA
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Protein sequence | MQKNIWRNTL FCLGLCAMAP VMAQAAPSGT LLRTAHSYTV KRGDTLWGIA AHFLKNPWEW PRLWHRNTYI KNPNLIYPGD RVVITRGPGG QPELRVIALH PQMTAEPLPT VARGEVMPFL GNPGVIASKK AYDQLPYLAA SASEHIVYAV GDKLYASGLA HAPVGAHYQI VALGPELYRP GRKNAVGYAL RDLGSAVVRR NGAHAAMEIT NALKEISLGD RLIPATKSVV PHYFPSAPSH PVKAHIIAKM SDYPEIMVGQ VVIVDQGRED GLRDGNVLQI ERAAETTKNA VTGKTFALPP QKVGSVMLFR VFPTVSYAVI TTATRGIQVG DHLASPSPVT ASDSSAGNG
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