| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_0015 |
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| Symbol | topA |
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| ID | 7134408 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011761 |
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| Strand | - |
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| Start bp | 15617 |
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| End bp | 18172 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643528432 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002424529 |
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| Protein GI | 218667808 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACACC AGCTCGTTAT CGTAGAATCA CCGGCAAAAG CCAAGACCAT CCAGAAATAT
CTGGGGGACG ATTTTCAGGT CCTTGCGTCC TACGGCCATG TCCGTGATCT GCAGCCCAAA
GAGGGCGCCG TGGATACGGA GCATGATTTC GCCATGCGCT ACACCCCCAT CGAGCGCAAC
GAGCGCCATG TGGACGCCAT CGCCAAGGCC CTGCGCGGTG CCGATAAACT ATGGCTCGCC
ACCGATCCGG ATCGCGAAGG CGAGGCCATC TCCTGGCACC TGGTGGAGCT CTTGCGCGAA
CGCCAGCTGC TCGGCGACAA GCCGACGCAA CGCGTGGTCT TTCATGAAAT CACCAAAAAA
GCCGTGCAGG AGGCCATTGC CCATCCCCGC GAAATCGCCA TGGATCTGGT CAACGCCCAG
CAGGCGCGCC GCGCCCTCGA TTATCTGGTG GGCTTCAACC TGTCACCGCT GCTCTGGCGC
AAGGTGCGTC CGGGGCTCTC CGCGGGACGG GTACAAAGTG CCGCCCTGCG CCTGATCTGT
GAGCGCGAAA ACGAAATCGA GGCCTTCGTC AGCCGCGAAT ACTGGACCAT CGCCAGCCGC
CTGCAACACG CGGGCAGCGC GTTCACCGGC CGCCTGACCC ACTGGCAGAA TAAAAAGCTC
GAACAGTTCG ACATCGCCGA CGGTGACCAG GCCCAGGCCA TTCGTAGCGG CATGGAAGAC
GACCTCGGTC GCCAGGCACT GCGGGTCCGG GAAGTGGAGC GCAAAAGCCG GCAACGCCAG
CCGGCCGCGC CCTTCACCAC CTCCACTCTG CAGCAGGAAG CGTCGCGCAA GCTCGGCTTC
AACGCCAGCC GGACCATGCG CGTTGCCCAA CAGCTTTATG AAGGCATCAA TATCGGCAAC
GAGACCGTGG GCCTCATCAG TTATATGCGT ACCGATGCCG TCAATCTCGC CGAGGAGGCC
ATTGCCTCGA TCCGTACTTT TATCGATGGC TACTACGGCA GCGAATTTGT CCCCGAGACG
CCGCGCCGCT ACAAGACCAA AACCAAGAAC GCCCAGGAAG CGCACGAAGC CATCCGTCCT
ACGGACATCG CGCGCACCCC GGAATCCCTC CAGGGGGTGC TGGAACGCGA TCTCTGGCGC
CTGTACGATC TGGTCTGGAA GCGCAGCATT GCCTGCCAGA TGGCGCCGGC CCGCCTCGAT
CTCGTCGCCG TGGATATGGA TGCCGGGACA CACTGGACCC TGCGCGCCAA CGGCTCCACG
GTGACCTTTC CCGGCTTCAT GGCCGTCTAT CAGGAAGGCA AGGACGACGG CGACGAGGAT
GAGAGCAACC GCATCCTGCC GCCCCTCGAT GTCGGCGATG AACCTCTGGT GCTCGGCATC
GATCCCGAAC AGCACTTTAC CGAGCCCCCT CCTCGTTACA GCGACGCCAC CCTGGTCAAA
ACCCTGGAAG CCCACGGTAT CGGCCGACCA TCCACCTACG CCAGCATCAT TCAGACTCTG
CAGAACCGCG AATACGTCGC CGTCGAGCAG CGCCGATTCC ATCCTACCGA CCTCGGCCGG
GTAGTCGGCC GGTTCCTGAT CAACCACTTT GAACGATATG TGGACTACGG CTTCACCGCC
AGCATGGAAG ATGAACTGGA CGCCGTCTCC CGCGGCGAAA AGCAATGGCA ACCCGTCCTC
AGTGCGTTCT GGAGCCCCTT CCGCGCGCTG CTCGACGAAA AAGCCAACGT CAGCCGCGCC
GAAGCGACCA GTGAGGCGCT GGAGGAAGCC TGCCCCCAAT GTGGCAAGCC CTTATTCCTG
CGCCTCGGGC GCCATGGGCG TTTCGTGGCC TGTTCCGGTT ATCCCGAATG CAACTATACC
CGTCCGGTAG ACGGGCCGCG CGAACCCGCC GAACCCGTAG GCCGCGATTG TCCCGATTGT
GGCAAGCCGT TGGTGTACAA AACCGGGCGT TATGGGCGTT TCATCTCCTG CAGCGGCTAT
CCGGAATGTA AACATATCGA ACCACTGACC CAGCCCAAGT CATCGGGCGT CACCTGTCCC
CAGTGCGGTG AGGGCGAACT GGTCGAAAAA CGCAGCCGCT ACGGCAAGGT TTTTTATTCC
TGCAATACCT ACCCCAAATG CACTTACGCC GTCTGGGGAC CACCGGTGGC ACGGCCCTGT
CCGCGTTGCG GCTGGCCCAT CATGATCGAG AAAAGCGGCA AGCGGCTGGG AGAGCAGCTT
GCCTGCCCGC AGAGCGAATG TGCTTTCCAC TTCCCGGCAA ACGCCAGCGA CGCGGAAATC
GCCGCCCTGC TGCCCGGATA CAGCCCGCCG CCGCCCCGCG AAAAGCGCGC GCCCCCGGCC
AAGAAGGCTG CTCCCGCCCG CAAAACCACA GCGAAAACGG CCAAAAAACC GGCCACGGAA
GCCACGGCGG TTGCCGCCCA AAAAACCGCG AAAGCCAAAA CGACGAGCGC CGCGGCAAAA
AAACCCGCCG CTTCCAAAGC CAGGGGCCCG TCAGCCGGCG AAGGCAAGAC CTCCCCATCC
CGTAAACGCG CCGCGAAAGG TGCCAGCGAT TCATGA
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| Protein sequence | MAHQLVIVES PAKAKTIQKY LGDDFQVLAS YGHVRDLQPK EGAVDTEHDF AMRYTPIERN
ERHVDAIAKA LRGADKLWLA TDPDREGEAI SWHLVELLRE RQLLGDKPTQ RVVFHEITKK
AVQEAIAHPR EIAMDLVNAQ QARRALDYLV GFNLSPLLWR KVRPGLSAGR VQSAALRLIC
ERENEIEAFV SREYWTIASR LQHAGSAFTG RLTHWQNKKL EQFDIADGDQ AQAIRSGMED
DLGRQALRVR EVERKSRQRQ PAAPFTTSTL QQEASRKLGF NASRTMRVAQ QLYEGINIGN
ETVGLISYMR TDAVNLAEEA IASIRTFIDG YYGSEFVPET PRRYKTKTKN AQEAHEAIRP
TDIARTPESL QGVLERDLWR LYDLVWKRSI ACQMAPARLD LVAVDMDAGT HWTLRANGST
VTFPGFMAVY QEGKDDGDED ESNRILPPLD VGDEPLVLGI DPEQHFTEPP PRYSDATLVK
TLEAHGIGRP STYASIIQTL QNREYVAVEQ RRFHPTDLGR VVGRFLINHF ERYVDYGFTA
SMEDELDAVS RGEKQWQPVL SAFWSPFRAL LDEKANVSRA EATSEALEEA CPQCGKPLFL
RLGRHGRFVA CSGYPECNYT RPVDGPREPA EPVGRDCPDC GKPLVYKTGR YGRFISCSGY
PECKHIEPLT QPKSSGVTCP QCGEGELVEK RSRYGKVFYS CNTYPKCTYA VWGPPVARPC
PRCGWPIMIE KSGKRLGEQL ACPQSECAFH FPANASDAEI AALLPGYSPP PPREKRAPPA
KKAAPARKTT AKTAKKPATE ATAVAAQKTA KAKTTSAAAK KPAASKARGP SAGEGKTSPS
RKRAAKGASD S
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