Gene Mchl_4402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMchl_4402 
Symbol 
ID7117716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium chloromethanicum CM4 
KingdomBacteria 
Replicon accessionNC_011757 
Strand
Start bp4652883 
End bp4654574 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content72% 
IMG OID643527101 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_002423106 
Protein GI218532290 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.377329 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCCC TCGCCGCTCC GTCGCTGTCG ATCGCCCTGC CGTTCGAGGC GGCGCTGGCC 
GAGATGGCCG CGCCCCTGCT CCTGCTCGAT GCGGGCGGCA GCGTCGTCTT CGCCAATGCC
CACGCGGCGG CCTTGCTCGC CTGCGCCGAA CCGGTCGGCC TTCCCCTCAC CGCCCTGCTG
GTGCCCTTCG GCGCCGCGGA GCCGGAGGCC GAGCCCATCC TAGAGGCTGT GCGCGCCGCC
CGCCCCGTCC GGGCGCGGCT CACCCTCGGC GGCGACCGCC GCGTCGAGGC GGCGCTGGCG
CCGCTCTCGG CCGGCGGCTT CGCCCTCACC TTCGAGGACG TGACCGAGCA ACTCCGCGGC
GCGGCCCTGG CCCGGCAGGA GCCGCTCACC GGCCTGTGCA ACCGCGTCGG CCTGCACGAC
CGCCTCGACG CGGCGCTGAC CGAGGCGGCC CGGACGGGGG CACCGCTCGC GGTGCTGATG
CTCGACCTCG ATCGGTTCAA GACGGTCAAC GACACCCTCG GGCATCCGGT CGGCGATGCG
CTCCTGCGCA AGGTCGCCGA GCGCCTGCGC CGGGCCACCC GCAGCGGGGA TCTGGTCGCA
CGGCTCGGCG GCGACGAGTT CGCCATCCTT CAAGTCGATC CCCAAGTTGG ACCCCATGCT
GGCGTCGAGC AGCCGCACGC GGCCGAGGCG CTGGCACGCC GCCTCGTCGA TCTCGTCGGG
CGCACCTACG TCGTCGATGG CCACATGCTC AATGTCGGCG TCAGCGTCGG CGTCGCCATC
GCCCCCGCCG ACGGCCAGAA CGCCGACGAC CTGCTGAAAC ACGCCGACCT CGCGCTCTAC
CGGGCCAAGG CCGCGGGCCG GGGCACCTAC CGCTTCTTCG AGCCGGCGAT GAACGCGCAG
ATGCAGGCGC GCCGCGGCCT GGAGATCGAC CTGCGCCGGG CAATGGCCCT CAAGCAGTTC
GACCTCGCCT TCCAGCCGCA AATCCAACTG GAGAGCGGGG ACGTGACGGG CTTCGAGGCG
CTGCTGCGCT GGAACCACCC CGAGCGCGGA CCGGTGTCGC CGGCCCTGTT CATTCCGTTG
GCCGAGGAGA TCGGCGTCAT CGTCGGCATT GGCGAGTGGG TGTTGCGCAC CGCCTGCCGC
GAGGCGGCGC GCTGGCCGCA CCCCGCATCG ATCGCCGTGA ACCTCTCGCC CGTGCAGTTC
CGCGGCGGCC GGCTGGTCGA GACGGTGACG AACGTGCTGG CCCAGACCGA CCTCGACCCG
GCCCGGCTGG AACTGGAGAT CACCGAAGGC GCGCTCCTCG AGAACACCGA CAGCGTGCTC
GACGTGCTGA ACGGCCTGCG CGCGCTCGGC GTGAAGATCT CCATGGACGA TTTCGGCACC
GGCTACTCGT CCTTGAGCTA CCTGCAGAAA TTCCCCTTCG ACAAGATCAA GATCGACCAG
TCCTTCGTCC GCGGCATGGA GGGCAATGCC GAGTGCGGGG CGATCGTGCG GGCCATCGCC
CGGCTCGGCG CCAGCCTCGG CATGCGCACC ACCGCCGAAG GGGTCGAGAC GGCGACGCAG
CTCGACGCCA TCCGCGCCGA GGGCTGCACC GAGGTCCAGG GCTACCTGAC CGGACGCCCG
ATGCCGGCCG CCCAGGCCGC CGCCCTGTTG TCCGCCTCGC CCGCTCCCTC GCCCTCGACC
TTGCCCGCCT GA
 
Protein sequence
MSALAAPSLS IALPFEAALA EMAAPLLLLD AGGSVVFANA HAAALLACAE PVGLPLTALL 
VPFGAAEPEA EPILEAVRAA RPVRARLTLG GDRRVEAALA PLSAGGFALT FEDVTEQLRG
AALARQEPLT GLCNRVGLHD RLDAALTEAA RTGAPLAVLM LDLDRFKTVN DTLGHPVGDA
LLRKVAERLR RATRSGDLVA RLGGDEFAIL QVDPQVGPHA GVEQPHAAEA LARRLVDLVG
RTYVVDGHML NVGVSVGVAI APADGQNADD LLKHADLALY RAKAAGRGTY RFFEPAMNAQ
MQARRGLEID LRRAMALKQF DLAFQPQIQL ESGDVTGFEA LLRWNHPERG PVSPALFIPL
AEEIGVIVGI GEWVLRTACR EAARWPHPAS IAVNLSPVQF RGGRLVETVT NVLAQTDLDP
ARLELEITEG ALLENTDSVL DVLNGLRALG VKISMDDFGT GYSSLSYLQK FPFDKIKIDQ
SFVRGMEGNA ECGAIVRAIA RLGASLGMRT TAEGVETATQ LDAIRAEGCT EVQGYLTGRP
MPAAQAAALL SASPAPSPST LPA