| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_4176 |
|---|
| Symbol | |
|---|
| ID | 7115301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | - |
|---|
| Start bp | 4401739 |
|---|
| End bp | 4403841 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643526890 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002422898 |
|---|
| Protein GI | 218532082 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.615666 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTGA ACGACCTCGA AGAACTCGCG CGAATCGCCT TCGACTGGCT CTGGGCCACC
GATCCCGAGG ATCGATTCAG CTACGTCTCC CCAGGCGCCG AGCGTGTGCT GGGCCGCTCT
CCGGCGGACC TGATCGGGCT CACGCGGTCG GCCCTGGTCT GCGAGGGGGA GGGTGAGAGC
CTTGCCGTCT ACCGCGAGAC GATCACCGCC CGCCGCCCGT TCCGCGACCT GACCTACGTC
TACCGCCATC CCGACGGCAC GCCGCGCTGG TTCGAGATCA GCGGCCGCCC GCATTTCTCG
CCCGAGGGCG ATTTCCTGGG CTATCACGGC GTCGGCAGCG ACGTCACCGA GCAGCACCGG
ACCCGGTGCG CCCTGGTCGA GGCGCACGCC GAACTCAGCG AGCAGAACCG GCGCTTCGAC
GCGGCCCTGG AGAACATGAC GCACGGCCTG TGCATGTTCG ATGCGGAGCA GCGGCTCCTG
GTGTGGAACC GGCGCTACCT GGGGATCTTC GGCCTGCCCG ACGACGCGGT CCATGTCGGC
ATGGGCCAGC GCGCCATCAT CGAGATGCTG GTGGCGCGCG GGTGCTACAA GCGCGGCGCC
ACAGTCGATG CGATCAGCGA GGGCACCCGC ACCTCGCTCA GCGGAGACGG GTCGAAATCG
GTTTTGCGCG AACTCGCCGA CGGGCGGGTC ATCGCCGTGA CCCACCGGCC CATGGCCGAT
GGCGGCGGCT GGGTGGCGAC CTTCGAGGAC ATCACGGAGC GGCGGCGCAA CGAGGCGCGC
ATCATCCACA TGGCCCGCCA CGACGGGCTC ACCGACCTGC CGAACCGCAC CCACCTGCGC
GAGGTCGGCG CCGAATGGCT CGCGGCGTTG CGCACCGCCG CGGAGGCGCC GCTCGCGGTG
CTCTGCCTCG ACCTCGACCG GTTCAAGCCG GTCAACGACA GCTTCGGCCA CGCGGTGGGC
GATGCCCTGC TGCGGGCGGT GGCCGATCGG CTGCGCGGGC ACGTGCGCAG CCACGACGTG
GTGGCCCGGC TCGGCGGCGA CGAATTCGCG GTGCTGTCCC GCGTCGAGGA TGCGGCCGCG
GCCGCGGCCC TGGCCGAGCG CCTGATCGAG ACCGTGGGCG CGCCCTACAC CCTCGACGGG
ATCACCGTCG AGATCGGGAT GAGCGCCGGC ATCGCCCTGG CCGAGGGCGA CGTCCCGCAC
GACATCGAGC GCCTCCTCAA GGAGGCCGAC CTCGCCCTCT ACGAGGCGAA GACCGAGGGG
CGCGGCACCG TCCGCCTGTT CGAGCCGCAG ATGGACGAGA CCCTGCGCGA GCGGCTCGGC
CTCGAACGCG AGCTGCGCGA GGCGCTCACG CTGGACCGCT TCGAACTGCA TTATCAGCCG
CTCGTGAACC TGTCCGACAA CCGCATCACC GGCATGGAGG CGCTGATCCG CTGGCACCAT
CCCGAGCGCG GGCTCGTGAG CCCGGCGGTG TTCATCCCGC TCGCCGAGGA GACCGGTCTG
ATCGTGCCGA TCGGCGAATG GGTGCTGCGC CAGGCCTGCC GGGACGCGGT GGACTGGCCG
GGCGAGATCA GTGTGGCCGT CAACGTCTCG CCGCTGCAGC TGCGCCACCG CGGCTTCATC
CAGAGCGTGC TCGGCGCGCT CGCGGCCAGC GGCCTCAAGG CGAGCCGGCT CGAACTGGAA
ATCACCGAGA ACGTGCTGCT CGATGACACC GAGGCGAACC TCGAAACGCT CCACACCCTG
CGCAAGCTCG GCGTGCGCAT CTCCATGGAC GATTTCGGAA CCGGCTATTC CTCGATCAGC
TACCTGCGCC GCTTCCCCTT CGACAAGATC AAGATCGACC GTTCCTTCGT GCGTGACTGC
GCCGCCCAGT CGGAGGCCGG TGCGATCATC CGCGCCATCG TGAGCCTGGG GGCGAGCCTC
GGCATCACCA CCCTGGTCGA AGGCGTCGAG ACCGAGCCGC AGCTCGCCAC GATCCGGGCG
GAGGGCGCGC AGGAGGTGCA GGGTTACCTG TTCAGTCCGC CCCGCCCGGT TCACGAGATC
GCCGTCCTGC TCGAAGCCGG GACCACGGCC GAGGGCCGGC CCGGGCGGAC GCTGGCAGCC
TGA
|
|---|
| Protein sequence | MPLNDLEELA RIAFDWLWAT DPEDRFSYVS PGAERVLGRS PADLIGLTRS ALVCEGEGES
LAVYRETITA RRPFRDLTYV YRHPDGTPRW FEISGRPHFS PEGDFLGYHG VGSDVTEQHR
TRCALVEAHA ELSEQNRRFD AALENMTHGL CMFDAEQRLL VWNRRYLGIF GLPDDAVHVG
MGQRAIIEML VARGCYKRGA TVDAISEGTR TSLSGDGSKS VLRELADGRV IAVTHRPMAD
GGGWVATFED ITERRRNEAR IIHMARHDGL TDLPNRTHLR EVGAEWLAAL RTAAEAPLAV
LCLDLDRFKP VNDSFGHAVG DALLRAVADR LRGHVRSHDV VARLGGDEFA VLSRVEDAAA
AAALAERLIE TVGAPYTLDG ITVEIGMSAG IALAEGDVPH DIERLLKEAD LALYEAKTEG
RGTVRLFEPQ MDETLRERLG LERELREALT LDRFELHYQP LVNLSDNRIT GMEALIRWHH
PERGLVSPAV FIPLAEETGL IVPIGEWVLR QACRDAVDWP GEISVAVNVS PLQLRHRGFI
QSVLGALAAS GLKASRLELE ITENVLLDDT EANLETLHTL RKLGVRISMD DFGTGYSSIS
YLRRFPFDKI KIDRSFVRDC AAQSEAGAII RAIVSLGASL GITTLVEGVE TEPQLATIRA
EGAQEVQGYL FSPPRPVHEI AVLLEAGTTA EGRPGRTLAA
|
|---|
| |