Gene Mchl_4176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMchl_4176 
Symbol 
ID7115301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium chloromethanicum CM4 
KingdomBacteria 
Replicon accessionNC_011757 
Strand
Start bp4401739 
End bp4403841 
Gene Length2103 bp 
Protein Length700 aa 
Translation table11 
GC content70% 
IMG OID643526890 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002422898 
Protein GI218532082 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.615666 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCTGA ACGACCTCGA AGAACTCGCG CGAATCGCCT TCGACTGGCT CTGGGCCACC 
GATCCCGAGG ATCGATTCAG CTACGTCTCC CCAGGCGCCG AGCGTGTGCT GGGCCGCTCT
CCGGCGGACC TGATCGGGCT CACGCGGTCG GCCCTGGTCT GCGAGGGGGA GGGTGAGAGC
CTTGCCGTCT ACCGCGAGAC GATCACCGCC CGCCGCCCGT TCCGCGACCT GACCTACGTC
TACCGCCATC CCGACGGCAC GCCGCGCTGG TTCGAGATCA GCGGCCGCCC GCATTTCTCG
CCCGAGGGCG ATTTCCTGGG CTATCACGGC GTCGGCAGCG ACGTCACCGA GCAGCACCGG
ACCCGGTGCG CCCTGGTCGA GGCGCACGCC GAACTCAGCG AGCAGAACCG GCGCTTCGAC
GCGGCCCTGG AGAACATGAC GCACGGCCTG TGCATGTTCG ATGCGGAGCA GCGGCTCCTG
GTGTGGAACC GGCGCTACCT GGGGATCTTC GGCCTGCCCG ACGACGCGGT CCATGTCGGC
ATGGGCCAGC GCGCCATCAT CGAGATGCTG GTGGCGCGCG GGTGCTACAA GCGCGGCGCC
ACAGTCGATG CGATCAGCGA GGGCACCCGC ACCTCGCTCA GCGGAGACGG GTCGAAATCG
GTTTTGCGCG AACTCGCCGA CGGGCGGGTC ATCGCCGTGA CCCACCGGCC CATGGCCGAT
GGCGGCGGCT GGGTGGCGAC CTTCGAGGAC ATCACGGAGC GGCGGCGCAA CGAGGCGCGC
ATCATCCACA TGGCCCGCCA CGACGGGCTC ACCGACCTGC CGAACCGCAC CCACCTGCGC
GAGGTCGGCG CCGAATGGCT CGCGGCGTTG CGCACCGCCG CGGAGGCGCC GCTCGCGGTG
CTCTGCCTCG ACCTCGACCG GTTCAAGCCG GTCAACGACA GCTTCGGCCA CGCGGTGGGC
GATGCCCTGC TGCGGGCGGT GGCCGATCGG CTGCGCGGGC ACGTGCGCAG CCACGACGTG
GTGGCCCGGC TCGGCGGCGA CGAATTCGCG GTGCTGTCCC GCGTCGAGGA TGCGGCCGCG
GCCGCGGCCC TGGCCGAGCG CCTGATCGAG ACCGTGGGCG CGCCCTACAC CCTCGACGGG
ATCACCGTCG AGATCGGGAT GAGCGCCGGC ATCGCCCTGG CCGAGGGCGA CGTCCCGCAC
GACATCGAGC GCCTCCTCAA GGAGGCCGAC CTCGCCCTCT ACGAGGCGAA GACCGAGGGG
CGCGGCACCG TCCGCCTGTT CGAGCCGCAG ATGGACGAGA CCCTGCGCGA GCGGCTCGGC
CTCGAACGCG AGCTGCGCGA GGCGCTCACG CTGGACCGCT TCGAACTGCA TTATCAGCCG
CTCGTGAACC TGTCCGACAA CCGCATCACC GGCATGGAGG CGCTGATCCG CTGGCACCAT
CCCGAGCGCG GGCTCGTGAG CCCGGCGGTG TTCATCCCGC TCGCCGAGGA GACCGGTCTG
ATCGTGCCGA TCGGCGAATG GGTGCTGCGC CAGGCCTGCC GGGACGCGGT GGACTGGCCG
GGCGAGATCA GTGTGGCCGT CAACGTCTCG CCGCTGCAGC TGCGCCACCG CGGCTTCATC
CAGAGCGTGC TCGGCGCGCT CGCGGCCAGC GGCCTCAAGG CGAGCCGGCT CGAACTGGAA
ATCACCGAGA ACGTGCTGCT CGATGACACC GAGGCGAACC TCGAAACGCT CCACACCCTG
CGCAAGCTCG GCGTGCGCAT CTCCATGGAC GATTTCGGAA CCGGCTATTC CTCGATCAGC
TACCTGCGCC GCTTCCCCTT CGACAAGATC AAGATCGACC GTTCCTTCGT GCGTGACTGC
GCCGCCCAGT CGGAGGCCGG TGCGATCATC CGCGCCATCG TGAGCCTGGG GGCGAGCCTC
GGCATCACCA CCCTGGTCGA AGGCGTCGAG ACCGAGCCGC AGCTCGCCAC GATCCGGGCG
GAGGGCGCGC AGGAGGTGCA GGGTTACCTG TTCAGTCCGC CCCGCCCGGT TCACGAGATC
GCCGTCCTGC TCGAAGCCGG GACCACGGCC GAGGGCCGGC CCGGGCGGAC GCTGGCAGCC
TGA
 
Protein sequence
MPLNDLEELA RIAFDWLWAT DPEDRFSYVS PGAERVLGRS PADLIGLTRS ALVCEGEGES 
LAVYRETITA RRPFRDLTYV YRHPDGTPRW FEISGRPHFS PEGDFLGYHG VGSDVTEQHR
TRCALVEAHA ELSEQNRRFD AALENMTHGL CMFDAEQRLL VWNRRYLGIF GLPDDAVHVG
MGQRAIIEML VARGCYKRGA TVDAISEGTR TSLSGDGSKS VLRELADGRV IAVTHRPMAD
GGGWVATFED ITERRRNEAR IIHMARHDGL TDLPNRTHLR EVGAEWLAAL RTAAEAPLAV
LCLDLDRFKP VNDSFGHAVG DALLRAVADR LRGHVRSHDV VARLGGDEFA VLSRVEDAAA
AAALAERLIE TVGAPYTLDG ITVEIGMSAG IALAEGDVPH DIERLLKEAD LALYEAKTEG
RGTVRLFEPQ MDETLRERLG LERELREALT LDRFELHYQP LVNLSDNRIT GMEALIRWHH
PERGLVSPAV FIPLAEETGL IVPIGEWVLR QACRDAVDWP GEISVAVNVS PLQLRHRGFI
QSVLGALAAS GLKASRLELE ITENVLLDDT EANLETLHTL RKLGVRISMD DFGTGYSSIS
YLRRFPFDKI KIDRSFVRDC AAQSEAGAII RAIVSLGASL GITTLVEGVE TEPQLATIRA
EGAQEVQGYL FSPPRPVHEI AVLLEAGTTA EGRPGRTLAA