| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_3952 |
|---|
| Symbol | |
|---|
| ID | 7117150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | - |
|---|
| Start bp | 4151377 |
|---|
| End bp | 4154517 |
|---|
| Gene Length | 3141 bp |
|---|
| Protein Length | 1046 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643526681 |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_002422691 |
|---|
| Protein GI | 218531875 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0825957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.60191 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACA ACAAGATGCT CATCGATGCG ATGCATCCGG AGGAGACCCG GGTCGTCACA
GTCCAAGGCT CGCGGGTCGA GGAATTTGAT TTCGAGGCGG CCAACCGCCG GCCTCTGAGG
GGCAACATCT ATCTCGCCAA GGTCACCCGC GTGGAGCCCT CGCTCCAGGC GGCCTTCGTC
GAGTACGGCG GCAACCGCCA CGGCTTCCTC GCCTTCAACG AGATCCACCC CGACTACTAC
CAGATCCCGA TGGCCGATCG CCTCGCGCTG ATCGAGGCCG AGGCGCGCGA GGAAGAGGAG
CACCGCGAGC GCGAGGAGCG CCGTCCGCCG CGGGGCCGCC GCTCGCGCGG GCGCCGGGCC
GAGGCCCGCG GTTCGCGCCC CGACGACACG GTGAAGTCGC AAGAGGCGGT GTCCGACGCA
GGCTCCGAGG ACGCTGCGAT CCCCGGTGAG GGCCAGGCCG CCGACGCGCC CGCGCCGGAG
GCGATCGAGG CGGTGCGGTC CGCTCTCGTC GAAGGACGGA TCGAAGAACG GAACGACGAG
CGGAGCGAGG GCGACGCGGC GTCCGCACCG GTCGAGGCCG GCGGCGATGC CTCCGCGAGC
CTGCCCGAGG CGGCGCTGGA GCCCGGCACC CCCACCGGCG AGGCGCCGGC TGACGAAGCC
GCCGCGGTCG AGCCCTCCGA CATCGCCGCG ATCTCCGAGG CGCCGAACCC GCCCGTCGAG
GCCGCGGAAT CCTCCGAGTC CGCGCCCGTC GAGGCTGCTT CCGCCGAGGC AGAGACGGTC
GAGCCGCAGC CCGTCGCCGC CAGCGCGCCG GTCTCCCAGG CCGAGATCGA GGAAGCCGAC
GCGGATTCCG ACGAGGACGC CGAGACCGAC GATTCGGACG ACGAGGACTC GGAGGATGAC
GAGTCCGACG ACGAGGATGA GGACGACGAT TCCGAGGACG ACGATTCGGA CGACGAGGAC
GACGACGAGG AATCCGAGGA CGGCGAGCCG CGCGTCGCGC AGGTCGGTGG CTCGGGCGAT
GCGCTCGCCG AGCTCCCCGA GCGTCCGCGC GCCTATCGCC GCCACTACAA GATCCAGGAG
GTGATCAAGC GCCGCCAGAT CATCCTCGTC CAGGTCGTCA AGGAAGAGCG CGGCACCAAG
GGCGCGGCGC TCACCACCTA CCTGTCGCTG GCCGGCCGCT ACTCGGTGCT GATGCCCAAC
ACCGGACGGG GCGGCGGCAT CTCGCGCAAG ATCACCTCGG CCGCCGACCG CAAGCGCCTC
AAGGAAGTGG TCGCCGACCT CGACGTGCCG GACGGGATGG GGATCATCCT GCGCACGGCC
GGCGCCTCGC GCACCAAGCC CGAGATCAAG CGCGACTTCG AGTACCTGAT GCGCCTGTGG
GAGAGCGTGC GCGAGCTGAC GCTGTCCTCG ACCGCCCCGG CGCTCGTCTA CGAGGAGGGC
TCGCTGATCA AGCGGGCGAT CCGCGACCTC TACAACAAGG ATCTCGACGA GGTTCTGGTC
TCCGGCGAAG ACGCCTATCG CGAGGCCAAG GACTTCATGC GGATGCTGAT GCCCGGCCAG
TCCAAGGTCG TGAAGCCCTA CCGCGATCCG ACGCCGATCT TCGCCCGCTA CGGCGTCGAG
CAGCAGCTCG ACGCGATGTT CTCGACCCAC GTCGCGCTGC GCTCCGGCGG CTACCTCGTC
ATCAACCCGA CCGAGGCGCT GGTCTCGATC GACGTGAACT CGGGCCGCGC GACCCGCGAG
CACGACATCG AGGACACCGC GCTCAAGACG AACCTCGAGG CGGCCGAAGA GGTTGCCCGG
CAGGTGCGCC TGCGCGATCT CGCCGGCCTC GTCGTGATCG ACTTCATCGA CATGGAGGAG
AAGCGCAACA ACCGGGCGGT GGAGAAGCGC CTGAACGAGG CGCTCAAGAA CGACCGGGCG
CGCATCCAGG TCGGGCGGAT CTCGCCCTTC GGCCTGCTTG AGATGAGCCG CCAGCGCATC
CGCACCGGCG TGCTCGAATC CTCCTCGATC CCCTGCGCCC ATTGCGGCGG CTCGGGCTTC
GTGCGGGCGA CCTCCTCGGT GGCGCTGCAC ATCCTGCGCT CGATCGAGGA GGTGCTGCTC
AAGTCGGCGA GCCACAACGT CGTGCTGCGC ACCCGCACCG AGACGGCGCT CTACATCCTC
AACCAGAAGC GGGCGCATCT CTTCGATCTC GAGCAGCGCT TCTCGGTCAC GATCACCATT
TCCGCCGACG ACCGGCTCGT GGCGACCTCC GCCTTCCAGC TCGAACGCGG TGAGCCGGCG
GTGAAGCACG AGGGCCCGGT GACGGGCGTG CGCGCCGTGG CGATCTCGCC GGTCTACGAG
GCCGAGGAGT TCGAGGACGA GGCGGTCGAG AGCCAGGAGA CCGAAGAGGT CGAGACCGAG
GTCGAAGCGG AGGCCGAGGG CGCGTCCGAG GAGCGCCCCG CCGCCGATGC GTCCGAGGAG
GGCGGTGGCC GTCGCCGCCG TCGCCGTCGC CGTCGCGGTG GCCGCGCCTC CGGTGAGGGC
GAGGCCCGCG CGCGTGACGA GGACGGGACC GACAGCGAGG ACGGGGCCGA GGACGGCACG
GAGGACGGCG ACGATGCGCC CGATTCCGAG CCGGAGGCCG CCGAGGCGGC TCTCGGCGCC
GCGGCCGAGC CGGACGAGAC CGCATCGGAC GCCGACGCCA ACGGCGAGGA CGCCAACGGA
CGCCGCCGTC GCCGCGGACG CCGGGGCGGT CGCGGCCGCG GCCGGACCGA GCGCAATGGC
CGTTCGGATT CCGAGCAGAA TTCCGATGCC GACGAGGTGC GGACCTCGGA GGAGTCCGAA
GCGCATCCCG AGGAGACCGC CTCCGATACC CTGCCGGTCG GCCCCGAGGA GCCGTTCAAC
GATGCCGATG TGAGCACCGT CTCGCTCGCC GCCGAGAACG GCGCCGCGGC CGAGCCGCCG
CCGGTCGTCC CCGCGCCGGA GCTCGAGCCG ATCCAGGTCG AGTCCTTCGC CGAGGCCGCG
ACCGAAGCGG CAGCGCCCAG CCCGGCCAAC GCTGAGCCCG CGCCGGAGCC CGTCGCGGTG
GTGCTGACGC CGCCGGACCC GAACCGTCCC AAGCGGGCCG GCTGGTGGTC GCGCACCAAG
GCGGCGCTGT CGGGGGAGTG A
|
|---|
| Protein sequence | MANNKMLIDA MHPEETRVVT VQGSRVEEFD FEAANRRPLR GNIYLAKVTR VEPSLQAAFV
EYGGNRHGFL AFNEIHPDYY QIPMADRLAL IEAEAREEEE HREREERRPP RGRRSRGRRA
EARGSRPDDT VKSQEAVSDA GSEDAAIPGE GQAADAPAPE AIEAVRSALV EGRIEERNDE
RSEGDAASAP VEAGGDASAS LPEAALEPGT PTGEAPADEA AAVEPSDIAA ISEAPNPPVE
AAESSESAPV EAASAEAETV EPQPVAASAP VSQAEIEEAD ADSDEDAETD DSDDEDSEDD
ESDDEDEDDD SEDDDSDDED DDEESEDGEP RVAQVGGSGD ALAELPERPR AYRRHYKIQE
VIKRRQIILV QVVKEERGTK GAALTTYLSL AGRYSVLMPN TGRGGGISRK ITSAADRKRL
KEVVADLDVP DGMGIILRTA GASRTKPEIK RDFEYLMRLW ESVRELTLSS TAPALVYEEG
SLIKRAIRDL YNKDLDEVLV SGEDAYREAK DFMRMLMPGQ SKVVKPYRDP TPIFARYGVE
QQLDAMFSTH VALRSGGYLV INPTEALVSI DVNSGRATRE HDIEDTALKT NLEAAEEVAR
QVRLRDLAGL VVIDFIDMEE KRNNRAVEKR LNEALKNDRA RIQVGRISPF GLLEMSRQRI
RTGVLESSSI PCAHCGGSGF VRATSSVALH ILRSIEEVLL KSASHNVVLR TRTETALYIL
NQKRAHLFDL EQRFSVTITI SADDRLVATS AFQLERGEPA VKHEGPVTGV RAVAISPVYE
AEEFEDEAVE SQETEEVETE VEAEAEGASE ERPAADASEE GGGRRRRRRR RRGGRASGEG
EARARDEDGT DSEDGAEDGT EDGDDAPDSE PEAAEAALGA AAEPDETASD ADANGEDANG
RRRRRGRRGG RGRGRTERNG RSDSEQNSDA DEVRTSEESE AHPEETASDT LPVGPEEPFN
DADVSTVSLA AENGAAAEPP PVVPAPELEP IQVESFAEAA TEAAAPSPAN AEPAPEPVAV
VLTPPDPNRP KRAGWWSRTK AALSGE
|
|---|
| |