Gene Mchl_3287 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMchl_3287 
Symbol 
ID7117054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium chloromethanicum CM4 
KingdomBacteria 
Replicon accessionNC_011757 
Strand
Start bp3465355 
End bp3468366 
Gene Length3012 bp 
Protein Length1003 aa 
Translation table11 
GC content71% 
IMG OID643526037 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_002422052 
Protein GI218531236 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCGT CCCGTCCGGT GCCACACAGC GATCGTGGAG CCGCCGCACC TGTCCAGAGC 
GCGCCGCGGG AGGCTGGGTT GGAAAGCCGC CTCGACGCCC TGTGCCGCTC CGTCGCCGAA
ATCTTCGCCG TCCCCATGGC GGCGATCGCG CTCATCGACG CGGATCGCAT TCGTTTCCGC
GCCCGCTACG GGCTCGCGGA GGCCGTCATC GACCGCGAAG ACGCCCTCTG CCAACACACG
ATCCGCCAGC CACGCGGTCA CGCCCTCGTG GTGTCGGACC TGATCCGTGA CGAGCGTTTC
GTCCATTCTC CCCTCGTCGT CGGCGCGCCG CATGCCCGCT TCTACGCGGG TCTGGCGATC
CGCTCGGGAG CGGGCCGGGT CGTCGGCACG CTGTGCCTGA TGGATCGGGT GCCGCGGGAC
GATGTCTCGT CCGACCGAGT GCGCGTCCTG CAAGAACTGG CGCTCGTCGC CGAGGCGCAT
CTTGAGCTCG ACGAAGCCCG CCGCGCGAGC GAGGCCGCGG AACGCCGGCG GGCGGAGGCG
CATCTCTTGG AATGGGAGGC GCGCCAGAGG GCGCTCGAGG CGGCCCACGC CATGGCCGAA
CAGATCGCCG CCTTCGGCCA TTGGCGGATT GATGCCGGAA CCCGCACCAT CGCGTGGTCG
GACGGGATCG CCCGCATCTT CGGGCGCAAC GCCGAACGCG CGACGCTGCC GCTCGAAACC
CATATCGGCT TCTATCATCC GGATGACCGC GAACGCGTCT GGGCCGCCAT GGACGAGGCG
CTCGCGGGCC GCAGCCGGAC TCTGGGGGGT GGCTACGAGC ACCGCTCTCG CATCCTTCGT
CCCGACGGCG AGATCCGGGT GGTGGCCGTT CACGGGATCG GCGAACACGA TGAGGCGGGC
CGGCTCGTCT CGATCTTCGG CGTCTGCCTC GATGTCACCG GCATGGCCCG CTCCGAGCAG
CGCCTGCGCG AGACCGGCGA GGCAATGCGG GCCGCTCTCG AGGCGATGGA TCAGGGCCTC
GTCATGATCG GCCCCGACGA CCGGGTTCAG GTCCACAACC AGCGCGTCCG CGATCTCCTA
GAACTGCCGG AGGACGTCCT GCACGAGGGT GTGTCCTACG GGGCGGTGCG GCGCTTTCTC
GGCCGGCGCG GCGAGTTCGT GCATGCGCCG CCCGAAGCCC AGGAATGGCT GGAGCACGGT
GACTTCCCGC CCGGCGTCCA ACGCTACGAG GGGATGCGGC CCAACGGCAC GATCCTGGAG
GTGCGGCACG CTCCGATGGC CTCCGGCGGC CACATCTGCA CCTTCACCGA CCTGACGGCG
TCTCGGCAGA GCGAGGCGGC CCTGCGCTCG GCCGAGGCCG ATTACCAGTC GTTGTTTCAG
AATGCGGTGA TCGGCGTCTA TCGGGCCCGG CTCGACGGCG GCATCGTCCA AGCCAACCGG
GCGCTCGCCC GGCTGCACGG CTACGGCGAT GCGGACCTAT CCCTGCCTGA GGGCGGCTTC
AGCCACGACT GGTACATCGA GCCGGGCCGG CACGAGGCCT TTCTGGCCTG CCTGGAGCGC
GAGGGCCACG TCGAGGACTT CGTATCCGAG GTGCGCCGCC ACGCGGGCGG GGAACGCATC
TGGGTCTCCG AGACGGCCTG GGTGGTGCGC GACGCGGCGG GCCGGCCGAT CTGGTTCGAG
GGCACCGTCG CGGATGCGAC GGAGCGCAAG CGTGCCCAGG CGCTGATCGA GCACATGGCC
CGCCACGACG CGCTGACCGG GCTGCCCAAC CGCCGGCTGT TCCAGGAGAC TCTGGCCCGG
GAGATCGACG GGGCCCGGCG CGACGGCGGC TCGGTGGTGG TGCTGTGCTG CGACCTCGAC
CGCTTCAAGG CGGTCAACGA CACCTTCGGG CATCCCGCGG GCGACGCCCT GCTCCGCGTC
ATCGCGGGCC GCCTCCGCGC GACCCTGCGC GAGGGCGACG TGGTGGCCCG GCTCGGCGGG
GACGAGTTCG CGATCATCCT GCCAAGCCGA GGGAAGCAGC GCCGTATCGC CGCCTTCGCC
CGCCGGCTGA TCCAGGCCGC CGGGCGGCCG GTCGATCTCG GCGGCCGCGC CACCACCGTC
GGCGTCAGCA TCGGCGTGGC GGTTTGGCCC AAGCACGGTG ACAGCGCCGA CACCCTGTTC
AAGAACGCCG ACATCGCACT CTACCGGGCC AAGGATTCCG GGCGGAACAC CTTCCGTTTT
TACGAGAGCG GGATGGCTCT CGCGGTCGTG ACCCGCAACC TCCTGGAAAT CGAGATGCGC
GAGTCGATCC GCTCCGGCGG GTTCGCGCTG CATTACCAAC CGATCTTCGC CCTTGCGGAC
GGTGCACCGC AGGGCTTCGA GGCTCTGTTG CGCTGGAATC ATCCGTTGCG CGGGCCGATC
TCGCCGGGGG CCTTCATCCC GCTGGCGGAG GAGAGCGGCC TCATCACCCA GCTCGGCGCC
TGGGCGCTGC ACGAGGCCTG CCGCGAGGCG GCCTCCTGGC CGGGCGATCT GCGGGTCGCC
GTCAACGTCT CGGCGGTGCA GTTCCGCAAG ACGGGGCTGG AGCAGAGCGT CATGCGCGCG
CTCGCGGCCT CGGGCCTACC GGCCGGGCGG CTCGAACTGG AGATCACCGA AAGCGTGCTG
ATGCAGGATT CGGACGCCGT GATCGGTTCT CTGCACCGCC TGCGCGCCAT GGGCGTGCGG
ATCGCGCTCG ACGATTTCGG CACGGGCTAC TCGTCCCTGA GCTACCTGTG CCGGTTCCCC
TTCGACAAGA TCAAGATCGA TCGCGCCTTC ATCCGCGACA TCGACGAGCC CGTGGCGGCG
GCGGTGGTGC GCGCGGTGGT GGGTTTGGGC GAGCGCCTCG GCATGGCCAT CACCGCCGAG
GGCGTGGAGA CGGAGGAGCA ATTGGTGCAG GTGCGGCGCA AGGGCTGCAC CGAGGTGCAG
GGCTTCCTGC TCGGCCGGCC GCTGCCGGCC GCGGAGGCCA TGACCCTCGT CGCGGGGCGG
GTGGCAGCCT GA
 
Protein sequence
MSASRPVPHS DRGAAAPVQS APREAGLESR LDALCRSVAE IFAVPMAAIA LIDADRIRFR 
ARYGLAEAVI DREDALCQHT IRQPRGHALV VSDLIRDERF VHSPLVVGAP HARFYAGLAI
RSGAGRVVGT LCLMDRVPRD DVSSDRVRVL QELALVAEAH LELDEARRAS EAAERRRAEA
HLLEWEARQR ALEAAHAMAE QIAAFGHWRI DAGTRTIAWS DGIARIFGRN AERATLPLET
HIGFYHPDDR ERVWAAMDEA LAGRSRTLGG GYEHRSRILR PDGEIRVVAV HGIGEHDEAG
RLVSIFGVCL DVTGMARSEQ RLRETGEAMR AALEAMDQGL VMIGPDDRVQ VHNQRVRDLL
ELPEDVLHEG VSYGAVRRFL GRRGEFVHAP PEAQEWLEHG DFPPGVQRYE GMRPNGTILE
VRHAPMASGG HICTFTDLTA SRQSEAALRS AEADYQSLFQ NAVIGVYRAR LDGGIVQANR
ALARLHGYGD ADLSLPEGGF SHDWYIEPGR HEAFLACLER EGHVEDFVSE VRRHAGGERI
WVSETAWVVR DAAGRPIWFE GTVADATERK RAQALIEHMA RHDALTGLPN RRLFQETLAR
EIDGARRDGG SVVVLCCDLD RFKAVNDTFG HPAGDALLRV IAGRLRATLR EGDVVARLGG
DEFAIILPSR GKQRRIAAFA RRLIQAAGRP VDLGGRATTV GVSIGVAVWP KHGDSADTLF
KNADIALYRA KDSGRNTFRF YESGMALAVV TRNLLEIEMR ESIRSGGFAL HYQPIFALAD
GAPQGFEALL RWNHPLRGPI SPGAFIPLAE ESGLITQLGA WALHEACREA ASWPGDLRVA
VNVSAVQFRK TGLEQSVMRA LAASGLPAGR LELEITESVL MQDSDAVIGS LHRLRAMGVR
IALDDFGTGY SSLSYLCRFP FDKIKIDRAF IRDIDEPVAA AVVRAVVGLG ERLGMAITAE
GVETEEQLVQ VRRKGCTEVQ GFLLGRPLPA AEAMTLVAGR VAA