| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_3237 |
|---|
| Symbol | |
|---|
| ID | 7117576 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | + |
|---|
| Start bp | 3419826 |
|---|
| End bp | 3420884 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 643525987 |
|---|
| Product | Squalene/phytoene synthase |
|---|
| Protein accession | YP_002422002 |
|---|
| Protein GI | 218531186 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.569329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTGT TTGCGCCTGA CCCTTTCGTC GCCAGTGCGG CGGACCGCTC TGCCTGCCGG
GCCGCGATCC GCGCCGGCTC CAAAAGCTTT TTCGCGGCCT CGCTGCTGCT GCCGCCCTCG
GTGCGGGTCT CGGCCTACGG CCTCTACGCC TTCTGCCGAC TCTCCGATGA CGCGGTGGAC
GAGGCGGGCG GCAACCGCGC CGCGGCCCTC GCCCGCCTTG AGCGACGGCT GACGGCGGCC
TGTGCGGGCC GGCCCGACAA CCACCCGGCC GACCGGGCGC TCGCAGAGGT GCTCGCCCGC
CACGCCATCC CCGAAAAGCT GCCGCGGGCG CTGCTCGAAG GGCTGGCCTG GGACACGCAA
GGCCGGCGCT ACGACACCCT GTCGGAGCTG GCCGCCTATG CCGCCCGGGT CGCGGGCGCG
GTCGGGGCGA TGATGACGCT GGTGATGGGG GTGCGCGACG GCCCCGCGCT CGCCCGCGCC
TGCGATCTCG GCCTGGCCAT GCAATTCACC AACATCGCCC GCGACGTCGG CGAGGATGCC
CGCGCCGGGC GCCTCTACCT GCCGCGCGAA TGGCTCGACG CGGCGGGCAT CAACGCGAAC
GCCTTCCTCG CCGAGCCTCG GCTCGGCCCC AGCCTGCAAC GGGTGGTGGC CGATCTTCTG
GCCGCGGCCG ACGAACTCTA CGCCCGCGCC GAACCCGGCA TCGCCGCGCT CCCGTTGAGC
TGCCGCCCGG CGATCCGCGC CGCCGGCCTG ATCTATGCGG AAATCGGCCG TGCCGTGGAG
GCGAACGGCC TCGATTCGGT CACGCGCCGC GCGCGCGTGA CCGGTGCGCG CAAGGCCGGG
CTTCTGGCCG CCGCTATCCT GCCCACGGGC GGCGGGGGGC TATCGGCGCC GCCTTTGCCC
GAGACCGCCT TCCTCGTGGA AGCCGTGACG CACCATCCGG TCCCGGCCGC GCGGCGCCTG
CCGCCGTGGT GGAACGTGTC GGGGCAGGTC GTGCGCGTGC TCGACCTGAT CGAGGTGCTG
GAGGAGCGCG ACGCCTTCCG CCGCTCGGCC GCGTCGTAA
|
|---|
| Protein sequence | MPVFAPDPFV ASAADRSACR AAIRAGSKSF FAASLLLPPS VRVSAYGLYA FCRLSDDAVD
EAGGNRAAAL ARLERRLTAA CAGRPDNHPA DRALAEVLAR HAIPEKLPRA LLEGLAWDTQ
GRRYDTLSEL AAYAARVAGA VGAMMTLVMG VRDGPALARA CDLGLAMQFT NIARDVGEDA
RAGRLYLPRE WLDAAGINAN AFLAEPRLGP SLQRVVADLL AAADELYARA EPGIAALPLS
CRPAIRAAGL IYAEIGRAVE ANGLDSVTRR ARVTGARKAG LLAAAILPTG GGGLSAPPLP
ETAFLVEAVT HHPVPAARRL PPWWNVSGQV VRVLDLIEVL EERDAFRRSA AS
|
|---|
| |